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Report for CCDS4193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4193.1 Public Homo sapiens 5 HNRNPA0 24 110 108 CCDS HistoryNCBI Gene:10949Re-query CCDS DB by CCDS ID:4193.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314940.7 ENSP00000316042.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314940.7Link to Ensembl Protein Viewer:ENSP00000316042.4Re-query CCDS DB by Nucleotide ID:ENST00000314940Re-query CCDS DB by Protein ID:ENSP00000316042
Original member Current member NCBI NM_006805.4 NP_006796.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006805.4Link to Protein Sequence:NP_006796.1Re-query CCDS DB by Nucleotide ID:NM_006805Re-query CCDS DB by Protein ID:NP_006796Link to BLAST:NP_006796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006796.1 305 Q13151 305 100% 0 0

Chromosomal Locations for CCDS 4193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137753149 137754066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGAGAATTCTCAGTTGTGTAAGCTGTTCATCGGCGGCCTCAATGTGCAGACGAGTGAGTCGGGCCTGC
GCGGCCACTTTGAGGCCTTTGGGACTCTGACGGACTGCGTGGTGGTGGTGAATCCCCAGACCAAGCGCTC
CCGTTGCTTTGGCTTCGTGACCTACTCCAATGTGGAGGAGGCGGACGCCGCCATGGCCGCCTCGCCCCAT
GCCGTGGACGGCAACACTGTGGAGCTGAAGCGGGCGGTGTCCCGGGAGGATTCGGCGCGGCCCGGTGCCC
ACGCCAAGGTTAAGAAGCTCTTTGTCGGAGGCCTTAAAGGAGACGTGGCTGAGGGCGACCTGATCGAGCA
CTTCTCGCAGTTTGGCACCGTGGAAAAGGCCGAGATTATTGCCGACAAGCAGTCCGGCAAGAAGCGTGGA
TTCGGCTTCGTGTATTTCCAGAATCACGACGCGGCAGACAAGGCCGCGGTGGTCAAGTTCCATCCGATTC
AGGGCCATCGCGTGGAGGTGAAGAAAGCAGTCCCCAAGGAGGATATCTACTCCGGTGGGGGTGGAGGCGG
CTCCCGATCCTCCCGGGGCGGCCGAGGCGGCCGGGGGCGCGGCGGTGGTCGAGACCAGAACGGCCTTTCC
AAGGGCGGCGGCGGCGGTTACAACAGCTACGGTGGTTACGGCGGCGGCGGAGGCGGCGGCTACAATGCCT
ACGGAGGCGGCGGCGGCGGTTCGTCCTACGGTGGGAGCGACTACGGTAACGGCTTCGGCGGCTTCGGCAG
CTACAGCCAGCATCAGTCCTCCTATGGGCCCATGAAGAGCGGCGGCGGCGGCGGCGGTGGAGGCAGTAGC
TGGGGCGGTCGCAGTAATAGTGGACCTTACAGAGGCGGCTATGGCGGTGGGGGTGGCTATGGAGGCAGCT
CCTTCTAA

Translation (305 aa):
MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPH
AVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRG
FGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLS
KGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSS
WGGRSNSGPYRGGYGGGGGYGGSSF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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