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Report for CCDS5169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5169.1 Public Homo sapiens 6 SLC2A12 24 110 108 CCDS HistoryNCBI Gene:154091Re-query CCDS DB by CCDS ID:5169.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5169.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275230.6 ENSP00000275230.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275230.6Link to Ensembl Protein Viewer:ENSP00000275230.5Re-query CCDS DB by Nucleotide ID:ENST00000275230Re-query CCDS DB by Protein ID:ENSP00000275230
Original member Current member NCBI NM_145176.3 NP_660159.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145176.3Link to Protein Sequence:NP_660159.1Re-query CCDS DB by Nucleotide ID:NM_145176Re-query CCDS DB by Protein ID:NP_660159Link to BLAST:NP_660159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660159.1 617 Q8TD20 617 100% 0 0

Chromosomal Locations for CCDS 5169.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 133991155 133991308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134001997 134002129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134006812 134006934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134028381 134029721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 134052378 134052480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGTACCTGTTGAAAACACCGAGGGCCCCAGTCTGCTGAACCAGAAGGGGACAGCCGTGGAGACGGAGG
GCAGCGGCAGCCGGCATCCTCCCTGGGCGAGAGGCTGCGGCATGTTTACCTTCCTGTCATCTGTCACTGC
TGCTGTCAGTGGCCTCCTGGTGGGTTATGAACTTGGGATCATCTCTGGGGCTCTTCTTCAGATCAAAACC
TTATTAGCCCTGAGCTGCCATGAGCAGGAAATGGTTGTGAGCTCCCTCGTCATTGGAGCCCTCCTTGCCT
CACTCACCGGAGGGGTCCTGATAGACAGATATGGAAGAAGGACAGCAATCATCTTGTCATCCTGCCTGCT
TGGACTCGGAAGCTTAGTCTTGATCCTCAGTTTATCCTACACGGTTCTTATAGTGGGACGCATTGCCATA
GGGGTCTCCATCTCCCTCTCTTCCATTGCCACTTGTGTTTACATCGCAGAGATTGCTCCTCAACACAGAA
GAGGCCTTCTTGTGTCACTGAATGAGCTGATGATTGTCATCGGCATTCTTTCTGCCTATATTTCAAATTA
CGCATTTGCCAATGTTTTCCATGGCTGGAAGTACATGTTTGGTCTTGTGATTCCCTTGGGAGTTTTGCAA
GCAATTGCAATGTATTTTCTTCCTCCAAGCCCTCGGTTTCTGGTGATGAAAGGACAAGAGGGAGCTGCTA
GCAAGGTTCTTGGAAGGTTAAGAGCACTCTCAGATACAACTGAGGAACTCACTGTGATCAAATCCTCCCT
GAAAGATGAATATCAGTACAGTTTTTGGGATCTGTTTCGTTCAAAAGACAACATGCGGACCCGAATAATG
ATAGGACTAACACTAGTATTTTTTGTACAAATCACTGGCCAACCAAACATATTGTTCTATGCATCAACTG
TTTTGAAGTCAGTTGGATTTCAAAGCAATGAGGCAGCTAGCCTCGCCTCCACTGGGGTTGGAGTCGTCAA
GGTCATTAGCACCATCCCTGCCACTCTTCTTGTAGACCATGTCGGCAGCAAAACATTCCTCTGCATTGGC
TCCTCTGTGATGGCAGCTTCGTTGGTGACCATGGGCATCGTAAATCTCAACATCCACATGAACTTCACCC
ATATCTGCAGAAGCCACAATTCTATCAACCAGTCCTTGGATGAGTCTGTGATTTATGGACCAGGAAACCT
GTCAACCAACAACAATACTCTCAGAGACCACTTCAAAGGGATTTCTTCCCATAGCAGAAGCTCACTCATG
CCCCTGAGAAATGATGTGGATAAGAGAGGGGAGACGACCTCAGCATCCTTGCTAAATGCTGGATTAAGCC
ACACTGAATACCAGATAGTCACAGACCCTGGGGACGTCCCAGCTTTTTTGAAATGGCTGTCCTTAGCCAG
CTTGCTTGTTTATGTTGCTGCTTTTTCAATTGGTCTAGGACCAATGCCCTGGCTGGTGCTCAGCGAGATC
TTTCCTGGTGGGATCAGAGGACGAGCCATGGCTTTAACTTCTAGCATGAACTGGGGCATCAATCTCCTCA
TCTCGCTGACATTTTTGACTGTAACTGATCTTATTGGCCTGCCATGGGTGTGCTTTATATATACAATCAT
GAGTCTAGCATCCCTGCTTTTTGTTGTTATGTTTATACCTGAGACAAAGGGATGCTCTTTGGAACAAATA
TCAATGGAGCTAGCAAAAGTGAACTATGTGAAAAACAACATTTGTTTTATGAGTCATCACCAAGAAGAAT
TAGTGCCAAAACAGCCTCAAAAAAGAAAACCCCAGGAGCAGCTCTTGGAGTGTAACAAGCTGTGTGGTAG
GGGCCAATCCAGGCAGCTTTCTCCAGAGACCTAA

Translation (617 aa):
MVPVENTEGPSLLNQKGTAVETEGSGSRHPPWARGCGMFTFLSSVTAAVSGLLVGYELGIISGALLQIKT
LLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAI
GVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFANVFHGWKYMFGLVIPLGVLQ
AIAMYFLPPSPRFLVMKGQEGAASKVLGRLRALSDTTEELTVIKSSLKDEYQYSFWDLFRSKDNMRTRIM
IGLTLVFFVQITGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVISTIPATLLVDHVGSKTFLCIG
SSVMAASLVTMGIVNLNIHMNFTHICRSHNSINQSLDESVIYGPGNLSTNNNTLRDHFKGISSHSRSSLM
PLRNDVDKRGETTSASLLNAGLSHTEYQIVTDPGDVPAFLKWLSLASLLVYVAAFSIGLGPMPWLVLSEI
FPGGIRGRAMALTSSMNWGINLLISLTFLTVTDLIGLPWVCFIYTIMSLASLLFVVMFIPETKGCSLEQI
SMELAKVNYVKNNICFMSHHQEELVPKQPQKRKPQEQLLECNKLCGRGQSRQLSPET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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