NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7204.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7204.1 Public Homo sapiens 10 HNRNPF 24 110 108 CCDS HistoryNCBI Gene:3185Re-query CCDS DB by CCDS ID:7204.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7204.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337970.7 ENSP00000338477.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337970.7Link to Ensembl Protein Viewer:ENSP00000338477.3Re-query CCDS DB by Nucleotide ID:ENST00000337970Re-query CCDS DB by Protein ID:ENSP00000338477
Original member Current member EBI ENST00000356053.7 ENSP00000348345.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356053.7Link to Ensembl Protein Viewer:ENSP00000348345.3Re-query CCDS DB by Nucleotide ID:ENST00000356053Re-query CCDS DB by Protein ID:ENSP00000348345
Original member Current member EBI ENST00000357065.8 ENSP00000349573.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357065.8Link to Ensembl Protein Viewer:ENSP00000349573.4Re-query CCDS DB by Nucleotide ID:ENST00000357065Re-query CCDS DB by Protein ID:ENSP00000349573
Original member Current member EBI ENST00000443950.6 ENSP00000400433.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443950.6Link to Ensembl Protein Viewer:ENSP00000400433.2Re-query CCDS DB by Nucleotide ID:ENST00000443950Re-query CCDS DB by Protein ID:ENSP00000400433
Original member Current member EBI ENST00000544000.5 ENSP00000438061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544000.5Link to Ensembl Protein Viewer:ENSP00000438061.1Re-query CCDS DB by Nucleotide ID:ENST00000544000Re-query CCDS DB by Protein ID:ENSP00000438061
Original member Current member EBI ENST00000682386.1 ENSP00000507787.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682386.1Link to Ensembl Protein Viewer:ENSP00000507787.1Re-query CCDS DB by Nucleotide ID:ENST00000682386Re-query CCDS DB by Protein ID:ENSP00000507787
Original member Current member NCBI NM_001098204.2 NP_001091674.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098204.2Link to Protein Sequence:NP_001091674.1Re-query CCDS DB by Nucleotide ID:NM_001098204Re-query CCDS DB by Protein ID:NP_001091674Link to BLAST:NP_001091674.1
Original member Current member NCBI NM_001098205.2 NP_001091675.1 Accepted alive Link to Nucleotide Sequence:NM_001098205.2Link to Protein Sequence:NP_001091675.1Re-query CCDS DB by Nucleotide ID:NM_001098205Re-query CCDS DB by Protein ID:NP_001091675Link to BLAST:NP_001091675.1
Original member Current member NCBI NM_001098206.2 NP_001091676.1 Accepted alive Link to Nucleotide Sequence:NM_001098206.2Link to Protein Sequence:NP_001091676.1Re-query CCDS DB by Nucleotide ID:NM_001098206Re-query CCDS DB by Protein ID:NP_001091676Link to BLAST:NP_001091676.1
Original member Current member NCBI NM_001098207.2 NP_001091677.1 Accepted alive Link to Nucleotide Sequence:NM_001098207.2Link to Protein Sequence:NP_001091677.1Re-query CCDS DB by Nucleotide ID:NM_001098207Re-query CCDS DB by Protein ID:NP_001091677Link to BLAST:NP_001091677.1
Original member Current member NCBI NM_001098208.2 NP_001091678.1 Accepted alive Link to Nucleotide Sequence:NM_001098208.2Link to Protein Sequence:NP_001091678.1Re-query CCDS DB by Nucleotide ID:NM_001098208Re-query CCDS DB by Protein ID:NP_001091678Link to BLAST:NP_001091678.1
Original member Current member NCBI NM_004966.4 NP_004957.1 Accepted alive Link to Nucleotide Sequence:NM_004966.4Link to Protein Sequence:NP_004957.1Re-query CCDS DB by Nucleotide ID:NM_004966Re-query CCDS DB by Protein ID:NP_004957Link to BLAST:NP_004957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091674.1 415 P52597 415 100% 0 0
NP_001091675.1 415 P52597 415 100% 0 0
NP_001091676.1 415 P52597 415 100% 0 0
NP_001091677.1 415 P52597 415 100% 0 0
NP_001091678.1 415 P52597 415 100% 0 0
NP_004957.1 415 P52597 415 100% 0 0

Chromosomal Locations for CCDS 7204.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43386637 43387884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGATGCTGGGCCCTGAGGGAGGTGAAGGCTTTGTGGTCAAGCTCCGTGGCCTGCCCTGGTCCTGCTCTG
TTGAGGACGTGCAGAACTTCCTCTCTGACTGCACGATTCATGATGGGGCCGCAGGTGTCCATTTCATCTA
CACTAGAGAGGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGGATCAGAAGATGATGTAAAAATGGCC
CTGAAAAAAGACAGGGAAAGCATGGGACACCGGTACATTGAGGTGTTCAAGTCCCACAGAACCGAGATGG
ATTGGGTGTTGAAGCACAGTGGTCCCAACAGTGCCGACAGCGCCAACGATGGCTTCGTGCGGCTTCGAGG
ACTCCCATTTGGATGCACAAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATTGTGCCAAACGGG
ATCACATTGCCTGTGGACCCCGAAGGCAAGATTACAGGGGAAGCGTTCGTGCAGTTTGCCTCGCAGGAGT
TAGCTGAGAAGGCTCTAGGGAAACACAAGGAGAGGATAGGGCACAGGTACATTGAGGTGTTTAAGAGCAG
CCAGGAGGAAGTTAGGTCATACTCAGATCCCCCTCTGAAGTTCATGTCCGTGCAGCGGCCAGGGCCCTAT
GACCGGCCCGGGACTGCCAGGAGGTACATTGGCATCGTGAAGCAGGCAGGCCTGGAAAGGATGAGGCCTG
GTGCCTACAGCACAGGCTACGGGGGCTACGAGGAGTACAGTGGCCTCAGTGATGGCTACGGCTTCACCAC
CGACCTGTTCGGGAGAGACCTCAGCTACTGTCTCTCCGGAATGTATGACCACAGATACGGCGACAGTGAG
TTCACAGTGCAGAGCACCACAGGCCACTGTGTCCACATGAGGGGCCTGCCGTACAAAGCGACCGAGAACG
ACATTTACAACTTCTTCTCTCCTCTCAACCCTGTGAGAGTCCATATTGAGATTGGCCCAGATGGAAGAGT
GACGGGTGAAGCAGATGTTGAGTTTGCTACTCATGAAGAAGCTGTGGCAGCTATGTCCAAAGACAGGGCC
AATATGCAGCACAGATATATAGAACTCTTCTTGAATTCAACAACAGGGGCCAGCAATGGGGCGTATAGCA
GCCAGGTGATGCAAGGCATGGGGGTGTCTGCTGCCCAGGCCACTTACAGTGGCCTGGAGAGCCAGTCAGT
GAGTGGCTGTTACGGGGCCGGCTACAGTGGGCAGAACAGCATGGGTGGCTATGACTAG

Translation (415 aa):
MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA
LKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG
ITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPY
DRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSE
FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA
NMQHRYIELFLNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH