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Report for CCDS7429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7429.1 Public Homo sapiens 10 PDE6C 24 110 108 CCDS HistoryNCBI Gene:5146Re-query CCDS DB by CCDS ID:7429.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371447.4 ENSP00000360502.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371447.4Link to Ensembl Protein Viewer:ENSP00000360502.3Re-query CCDS DB by Nucleotide ID:ENST00000371447Re-query CCDS DB by Protein ID:ENSP00000360502
Original member Current member NCBI NM_006204.4 NP_006195.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006204.4Link to Protein Sequence:NP_006195.3Re-query CCDS DB by Nucleotide ID:NM_006204Re-query CCDS DB by Protein ID:NP_006195Link to BLAST:NP_006195.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006195.3 858 P51160 858 100% 0 0

Chromosomal Locations for CCDS 7429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93612726 93613205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93620632 93620784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93620891 93620980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93621932 93622072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93625575 93625649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93626640 93626704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93626805 93626871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93629258 93629305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93634758 93634907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93635497 93635640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93636995 93637063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93640070 93640216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93640450 93640557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93640920 93641029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93645960 93646047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93655760 93655860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93658901 93659008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93659104 93659167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93662059 93662133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93662560 93662643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93663028 93663178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93665360 93665418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGGTGAGATCAACCAAGTTGCCGTGGAGAAATACCTGGAGGAGAACCCTCAGTTTGCCAAGGAGTACT
TTGACAGGAAGTTGCGGGTGGAGGTGCTGGGAGAAATCTTCAAGAACAGCCAGGTGCCAGTCCAGTCCAG
CATGTCCTTCTCTGAGCTGACCCAGGTGGAGGAGTCAGCCCTGTGCTTGGAGCTGCTGTGGACCGTGCAG
GAGGAGGGGGGCACCCCAGAGCAGGGGGTTCACAGGGCCCTGCAGAGGCTGGCCCACCTGCTCCAGGCTG
ACCGCTGCAGCATGTTCCTGTGCCGGTCCCGGAACGGCATACCTGAGGTGGCCTCTAGGTTGCTGGATGT
CACCCCCACCTCCAAGTTTGAGGACAACCTGGTGGGCCCTGACAAAGAAGTTGTGTTTCCATTGGACATT
GGGATAGTGGGTTGGGCTGCTCACACGAAGAAAACTCATAATGTCCCAGATGTGAAAAAGAACAGCCATT
TTTCTGACTTCATGGACAAGCAAACTGGGTATGTCACTAAGAACCTGCTGGCAACCCCGATCGTGGTGGG
CAAGGAGGTTCTTGCTGTGATCATGGCAGTTAACAAAGTAAATGCATCTGAATTTTCCAAACAGGATGAA
GAGGTCTTTTCCAAATACCTCAACTTTGTGTCTATCATCCTAAGGCTTCATCACACCAGCTACATGTACA
ATATTGAATCCCGAAGAAGCCAGATCCTTATGTGGTCAGCCAATAAAGTATTTGAAGAACTCACAGATGT
TGAGCGACAGTTTCACAAAGCGCTCTACACGGTTAGATCATATCTGAACTGTGAACGATACTCCATTGGA
CTGCTGGACATGACCAAGGAGAAGGAATTCTACGATGAATGGCCAATCAAGCTTGGAGAAGTAGAGCCTT
ATAAAGGTCCAAAGACACCTGATGGCAGGGAAGTCAACTTTTATAAAATCATTGATTACATTTTACATGG
AAAAGAAGAGATCAAAGTGATTCCGACGCCTCCTGCAGACCACTGGACACTCATTAGTGGGTTGCCAACA
TATGTTGCTGAAAATGGATTTATCTGTAACATGATGAATGCCCCTGCGGATGAATACTTCACATTTCAGA
AAGGACCTGTAGACGAAACTGGTTGGGTCATTAAGAATGTTTTGTCCCTGCCTATTGTCAACAAGAAAGA
AGATATTGTGGGAGTGGCTACATTTTACAACAGGAAGGATGGAAAACCTTTCGATGAGCATGATGAATAC
ATTACCGAGACTCTCACACAATTTCTTGGATGGTCTCTTTTAAATACTGACACCTACGATAAGATGAATA
AGCTAGAAAACAGAAAGGACATTGCTCAGGAAATGCTCATGAACCAAACCAAAGCCACTCCTGAAGAAAT
TAAGTCCATTTTGAAATTTCAAGAGAAGTTAAATGTTGATGTAATTGACGACTGTGAAGAAAAACAACTT
GTTGCAATTTTGAAAGAGGACTTGCCAGACCCACGCTCAGCAGAACTGTACGAATTCCGCTTCAGTGACT
TCCCCCTTACAGAGCACGGATTGATTAAATGTGGAATACGACTGTTTTTTGAAATAAATGTGGTGGAGAA
ATTCAAAGTACCTGTAGAGGTTCTTACCAGATGGATGTACACTGTGAGGAAAGGGTACCGAGCTGTCACT
TACCACAATTGGCGGCATGGGTTCAACGTGGGGCAGACCATGTTTACTTTGCTGATGACAGGAAGATTAA
AGAAGTACTACACAGATCTCGAAGCCTTTGCCATGCTTGCTGCTGCTTTCTGCCATGATATTGACCACAG
AGGCACCAATAATTTGTACCAGATGAAATCCACGTCTCCATTAGCAAGACTTCATGGTTCTTCTATTTTG
GAGAGGCACCACCTGGAGTACAGTAAGACTCTGTTGCAGGATGAGAGTTTAAACATCTTCCAGAACCTAA
ATAAGCGGCAGTTTGAAACAGTTATTCATTTGTTCGAGGTCGCAATAATAGCAACTGACCTGGCTTTATA
TTTCAAGAAGAGGACCATGTTTCAAAAAATTGTTGATGCCTGTGAACAAATGCAAACGGAAGAAGAAGCC
ATCAAATATGTAACTGTTGATCCAACCAAGAAAGAGATTATCATGGCAATGATGATGACGGCATGTGACT
TGTCTGCTATTACCAAGCCCTGGGAGGTGCAAAGTCAGGTAGCACTTATGGTTGCAAATGAATTTTGGGA
ACAAGGAGATCTGGAGAGAACAGTGTTGCAGCAACAACCCATTCCTATGATGGACAGAAACAAAAGAGAT
GAATTACCTAAACTTCAAGTTGGATTTATTGATTTTGTTTGTACTTTTGTATATAAGGAGTTCTCACGGT
TTCACAAAGAAATCACACCTATGCTGAGTGGTCTTCAGAATAACAGAGTAGAATGGAAATCACTAGCTGA
TGAGTATGATGCAAAGATGAAGGTCATTGAAGAGGAGGCAAAAAAGCAAGAAGGAGGAGCCGAAAAAGCT
GCTGAAGATTCAGGAGGTGGTGATGACAAAAAGTCCAAAACATGTTTAATGTTGTAA

Translation (858 aa):
MGEINQVAVEKYLEENPQFAKEYFDRKLRVEVLGEIFKNSQVPVQSSMSFSELTQVEESALCLELLWTVQ
EEGGTPEQGVHRALQRLAHLLQADRCSMFLCRSRNGIPEVASRLLDVTPTSKFEDNLVGPDKEVVFPLDI
GIVGWAAHTKKTHNVPDVKKNSHFSDFMDKQTGYVTKNLLATPIVVGKEVLAVIMAVNKVNASEFSKQDE
EVFSKYLNFVSIILRLHHTSYMYNIESRRSQILMWSANKVFEELTDVERQFHKALYTVRSYLNCERYSIG
LLDMTKEKEFYDEWPIKLGEVEPYKGPKTPDGREVNFYKIIDYILHGKEEIKVIPTPPADHWTLISGLPT
YVAENGFICNMMNAPADEYFTFQKGPVDETGWVIKNVLSLPIVNKKEDIVGVATFYNRKDGKPFDEHDEY
ITETLTQFLGWSLLNTDTYDKMNKLENRKDIAQEMLMNQTKATPEEIKSILKFQEKLNVDVIDDCEEKQL
VAILKEDLPDPRSAELYEFRFSDFPLTEHGLIKCGIRLFFEINVVEKFKVPVEVLTRWMYTVRKGYRAVT
YHNWRHGFNVGQTMFTLLMTGRLKKYYTDLEAFAMLAAAFCHDIDHRGTNNLYQMKSTSPLARLHGSSIL
ERHHLEYSKTLLQDESLNIFQNLNKRQFETVIHLFEVAIIATDLALYFKKRTMFQKIVDACEQMQTEEEA
IKYVTVDPTKKEIIMAMMMTACDLSAITKPWEVQSQVALMVANEFWEQGDLERTVLQQQPIPMMDRNKRD
ELPKLQVGFIDFVCTFVYKEFSRFHKEITPMLSGLQNNRVEWKSLADEYDAKMKVIEEEAKKQEGGAEKA
AEDSGGGDDKKSKTCLML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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