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Report for CCDS9308.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9308.2 |
Public |
Homo sapiens |
13 |
RNF17 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:56163](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9308.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 9308.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000255324.10 |
ENSP00000255324.5 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000255324.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000255324.5](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000255324](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000255324](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_031277.3 |
NP_112567.2 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_031277.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_112567.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_031277](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_112567](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_112567.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_112567.2 |
1623 |
Q9BXT8-3 |
1623 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 9308.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4872 nt): ATGGCGGCAGAGGCTTCGAAGACTGGGCCTTCTAGGTCTTCCTACCAGCGAATGGGGAGGAAGAGTCAGC CCTGGGGTGCCGCTGAAATCCAGTGCACCAGGTGTGGAAGGAGGGTATCCAGATCATCCGGTCACCATTG TGAACTTCAATGTGGACATGCTTTTTGTGAACTATGCTTGTTAATGACTGAAGAATGCACCACAATTATA TGCCCTGATTGTGAGGTTGCTACAGCTGTAAATACTAGACAACGCTACTACCCAATGGCTGGATATATTA AGGAAGACTCCATAATGGAAAAACTGCAGCCTAAGACGATAAAGAATTGTTCTCAGGACTTTAAGAAGAC TGCTGATCAGCTAACTACTGGTTTAGAACGTTCAGCCTCCACAGACAAGACTCTTTTGAACTCATCAGCT GTAATGTTGGACACTAATACTGCAGAAGAAATTGATGAAGCATTGAATACAGCACACCATAGTTTCGAAC AGTTAAGCATTGCTGGAAAAGCACTTGAACACATGCAGAAGCAAACGATAGAGGAAAGAGAAAGAGTTAT AGAAGTTGTGGAGAAACAGTTTGACCAACTTTTGGCTTTTTTTGATTCCAGGAAAAAGAACCTGTGTGAA GAATTTGCAAGAACTACTGATGATTATCTATCAAATTTAATAAAGGCTAAAAGCTACATTGAAGAGAAAA AAAATAATTTGAATGCAGCTATGAACATAGCAAGAGCATTACAATTATCGCCTTCTCTAAGAACATACTG TGACCTGAATCAGATTATCCGGACTTTGCAGTTAACTTCAGATAGTGAATTAGCACAAGTTAGTTCTCCA CAACTAAGGAACCCTCCCAGGTTGAGTGTGAATTGCAGTGAGATCATCTGTATGTTCAACAATATGGGAA AGATTGAATTTAGGGACTCAACAAAATGTTATCCCCAAGAAAATGAAATTAGACAGAATGTTCAAAAGAA ATATAATAACAAAAAGGAACTTTCTTGTTACGATACATACCCACCGCTAGAAAAGAAAAAGGTTGACATG TCTGTCCTAACCAGTGAAGCACCACCACCTCCTTTGCAACCTGAGACAAATGATGTACATTTAGAAGCAA AAAACTTCCAGCCACAGAAAGACGTTGCAACAGCATCCCCTAAAACCATTGCTGTGTTACCTCAGATGGG ATCTAGCCCTGATGTGATAATTGAAGAAATTATTGAAGACAACGTGGAAAGTTCTGCAGAGCTAGTTTTT GTAAGCCATGTAATAGATCCTTGCCATTTCTACATTCGGAAGTATTCACAAATAAAAGACGCCAAAGTAC TGGAGAAGAAGGTGAATGAATTTTGCAATAGGAGTTCACACCTTGATCCTTCAGACATTTTGGAACTAGG TGCAAGAATATTTGTCAGCAGTATTAAAAATGGAATGTGGTGTCGAGGAACTATCACAGAATTAATTCCA ATAGAGGGTAGAAATACCAGAAAACCTTGTAGTCCAACCAGATTATTTGTCCATGAAGTTGCACTAATAC AAATATTCATGGTAGATTTTGGAAATTCTGAAGTCCTGATTGTCACTGGAGTTGTTGATACCCATGTGAG ACCAGAACACTCTGCTAAGCAACATATTGCACTAAATGATTTATGTCTGGTTCTAAGGAAATCTGAACCA TATACTGAAGGGCTGCTAAAAGACATCCAGCCATTAGCACAACCATGCTCATTGAAAGACATTGTTCCAC AGAATTCAAATGAAGGCTGGGAAGAGGAAGCTAAAGTGGAATTTTTGAAAATGGTAAATAACAAGGCTGT TTCAATGAAAGTTTTTAGAGAAGAAGATGGTGTGCTTATTGTAGATCTGCAAAAACCACCACCGAATAAA ATAAGCAGTGATATGCCTGTGTCTCTTAGAGATGCGCTAGTTTTTATGGAACTAGCAAAGTTTAAGTCAC AATCACTAAGAAGTCACTTTGAAAAAAATACTACTTTACACTATCATCCACCTATTTTGCCTAAAGAAAT GACAGATGTTTCAGTAACGGTTTGTCATATAAATAGTCCTGGAGATTTCTATCTTCAGTTGATAGAGGGC CTGGATATTTTATTTCTATTAAAGACAATCGAGGAATTCTATAAAAGTGAAGATGGAGAAAATCTGGAAA TCCTCTGTCCAGTTCAAGATCAAGCCTGTGTAGCTAAATTTGAAGATGGAATTTGGTACCGAGCAAAAGT TATCGGATTGCCTGGACATCAGGAAGTTGAAGTTAAATATGTGGACTTTGGTAATACTGCAAAAATAACA ATCAAAGACGTGCGTAAAATAAAGGATGAGTTTCTGAATGCCCCAGAGAAGGCAATTAAATGTAAGTTGG CCTATATTGAACCATATAAAAGGACAATGCAGTGGTCCAAAGAAGCTAAAGAAAAATTTGAAGAAAAGGC TCAAGATAAATTTATGACATGTTCAGTTATCAAAATTCTGGAAGATAATGTGCTCTTAGTTGAGCTTTTC GATTCTCTTGGTGCTCCTGAAATGACTACTACTAGTATTAATGACCAGCTAGTTAAAGAGGGCCTAGCAT CTTATGAAATAGGATACATCCTCAAAGATAATTCTCAAAAGCATATTGAAGTTTGGGATCCTTCTCCAGA AGAAATTATTTCAAATGAAGTACACAACTTAAATCCTGTGTCTGCAAAATCTCTACCTAATGAGAATTTT CAGTCACTTTATAATAAGGAATTGCCTGTGCATATCTGTAATGTAATATCTCCTGAGAAGATTTATGTTC AGTGGTTGTTAACTGAAAACTTACTTAATAGTTTAGAAGAAAAGATGATAGCTGCTTATGAAAACTCAAA ATGGGAACCTGTTAAATGGGAAAATGATATGCACTGTGCTGTTAAGATCCAAGATAAAAATCAGTGGCGA AGAGGCCAGATCATCAGAATGGTTACAGACACATTGGTAGAGGTCTTGCTGTATGATGTGGGTGTTGAAC TAGTAGTGAATGTTGACTGTTTAAGAAAACTTGAAGAAAATCTAAAGACAATGGGAAGACTCTCTTTGGA ATGTTCTCTGGTTGACATAAGACCAGCTGGTGGGAGTGACAAGTGGACAGCAACAGCTTGTGACTGTCTT TCATTGTACCTGACTGGAGCTGTAGCAACTATAATCTTACAGGTGGATAGTGAGGAAAACAACACAACAT GGCCATTACCTGTGAAAATTTTCTGCAGAGATGAAAAAGGAGAGCGTGTTGATGTTTCTAAATATTTGAT TAAAAAGGGTTTGGCTTTGAGAGAAAGGAGAATTAATAACTTAGATAACAGCCATTCATTATCTGAGAAG TCTCTGGAAGTCCCCCTGGAACAGGAAGATTCAGTAGTTACTAACTGTATTAAAACTAACTTTGACCCTG ACAAGAAAACTGCTGACATAATCAGTGAACAGAAAGTGTCTGAATTTCAGGAGAAAATTCTAGAACCAAG AACCACTAGAGGGTATAAGCCACCAGCTATTCCTAACATGAACGTATTTGAGGCAACAGTCAGCTGTGTT GGTGATGATGGAACTATATTTGTAGTACCTAAACTATCAGAATTTGAGCTAATAAAAATGACAAATGAAA TTCAAAGTAATTTAAAATGCCTTGGTCTTTTGGAGCCTTATTTCTGGAAAAAAGGAGAAGCATGTGCAGT AAGAGGATCCGATACTCTGTGGTATCGTGGCAAGGTGATGGAGGTTGTAGGTGGCGCTGTCAGAGTACAA TATTTAGATCATGGATTCACTGAAAAGATTCCGCAGTGCCATCTTTACCCTATTTTGCTGTATCCTGATA TACCCCAGTTTTGTATTCCTTGTCAGCTCCATAATACCACACCTGTTGGGAATGTCTGGCAACCAGATGC AATAGAAGTTCTTCAACAACTGCTTTCAAAGAGACAGGTGGACATTCACATTATGGAGTTACCTAAAAAT CCATGGGAGAAATTGTCTATTCACCTCTATTTTGATGGAATGTCACTTTCTTATTTTATGGCATACTATA AATACTGTACTTCTGAACATACTGAGGAGATGTTGAAAGAAAAACCAAGATCAGATCATGATAAAAAGTA TGAAGAGGAACAATGGGAAATAAGGTTTGAGGAATTGCTTTCGGCTGAAACAGACACTCCTCTTTTACCA CCATATTTGTCTTCATCTCTGCCTTCCCCAGGAGAACTCTATGCTGTTCAAGTTAAGCACGTTGTCTCAC CTAATGAAGTGTATATTTGCCTTGATTCTATAGAAACTTCTAACCAGTCTAACCAGCATAGTGACACAGA TGATAGTGGAGTCAGCGGGGAATCAGAATCCGAGAGCCTTGATGAAGCACTGCAGAGGGTTAATAAGAAG GTAGAGGCGCTTCCTCCTCTGACGGATTTTAGAACAGAAATGCCTTGCCTTGCAGAATATGATGATGGCT TATGGTATAGAGCGAAGATTGTTGCCATTAAAGAATTTAATCCTTTATCTATCTTAGTACAATTTGTTGA TTATGGATCAACTGCAAAGCTGACATTAAACAGACTGTGCCAAATTCCTTCTCATCTTATGCGGTATCCA GCTCGAGCCATAAAGGTTCTCTTGGCAGGGTTTAAACCTCCCTTAAGGGATCTAGGGGAGACAAGAATAC CATATTGTCCCAAATGGAGCATGGAGGCACTGTGGGCTATGATAGACTGTCTTCAAGGAAAACAACTCTA TGCTGTGTCCATGGCTCCAGCACCAGAACAGATAGTGACATTATATGACGATGAACAGCATCCAGTTCAT ATGCCGTTGGTAGAAATGGGGCTTGCAGATAAAGATGAATAA
Translation (1623 aa): MAAEASKTGPSRSSYQRMGRKSQPWGAAEIQCTRCGRRVSRSSGHHCELQCGHAFCELCLLMTEECTTII CPDCEVATAVNTRQRYYPMAGYIKEDSIMEKLQPKTIKNCSQDFKKTADQLTTGLERSASTDKTLLNSSA VMLDTNTAEEIDEALNTAHHSFEQLSIAGKALEHMQKQTIEERERVIEVVEKQFDQLLAFFDSRKKNLCE EFARTTDDYLSNLIKAKSYIEEKKNNLNAAMNIARALQLSPSLRTYCDLNQIIRTLQLTSDSELAQVSSP QLRNPPRLSVNCSEIICMFNNMGKIEFRDSTKCYPQENEIRQNVQKKYNNKKELSCYDTYPPLEKKKVDM SVLTSEAPPPPLQPETNDVHLEAKNFQPQKDVATASPKTIAVLPQMGSSPDVIIEEIIEDNVESSAELVF VSHVIDPCHFYIRKYSQIKDAKVLEKKVNEFCNRSSHLDPSDILELGARIFVSSIKNGMWCRGTITELIP IEGRNTRKPCSPTRLFVHEVALIQIFMVDFGNSEVLIVTGVVDTHVRPEHSAKQHIALNDLCLVLRKSEP YTEGLLKDIQPLAQPCSLKDIVPQNSNEGWEEEAKVEFLKMVNNKAVSMKVFREEDGVLIVDLQKPPPNK ISSDMPVSLRDALVFMELAKFKSQSLRSHFEKNTTLHYHPPILPKEMTDVSVTVCHINSPGDFYLQLIEG LDILFLLKTIEEFYKSEDGENLEILCPVQDQACVAKFEDGIWYRAKVIGLPGHQEVEVKYVDFGNTAKIT IKDVRKIKDEFLNAPEKAIKCKLAYIEPYKRTMQWSKEAKEKFEEKAQDKFMTCSVIKILEDNVLLVELF DSLGAPEMTTTSINDQLVKEGLASYEIGYILKDNSQKHIEVWDPSPEEIISNEVHNLNPVSAKSLPNENF QSLYNKELPVHICNVISPEKIYVQWLLTENLLNSLEEKMIAAYENSKWEPVKWENDMHCAVKIQDKNQWR RGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEENLKTMGRLSLECSLVDIRPAGGSDKWTATACDCL SLYLTGAVATIILQVDSEENNTTWPLPVKIFCRDEKGERVDVSKYLIKKGLALRERRINNLDNSHSLSEK SLEVPLEQEDSVVTNCIKTNFDPDKKTADIISEQKVSEFQEKILEPRTTRGYKPPAIPNMNVFEATVSCV GDDGTIFVVPKLSEFELIKMTNEIQSNLKCLGLLEPYFWKKGEACAVRGSDTLWYRGKVMEVVGGAVRVQ YLDHGFTEKIPQCHLYPILLYPDIPQFCIPCQLHNTTPVGNVWQPDAIEVLQQLLSKRQVDIHIMELPKN PWEKLSIHLYFDGMSLSYFMAYYKYCTSEHTEEMLKEKPRSDHDKKYEEEQWEIRFEELLSAETDTPLLP PYLSSSLPSPGELYAVQVKHVVSPNEVYICLDSIETSNQSNQHSDTDDSGVSGESESESLDEALQRVNKK VEALPPLTDFRTEMPCLAEYDDGLWYRAKIVAIKEFNPLSILVQFVDYGSTAKLTLNRLCQIPSHLMRYP ARAIKVLLAGFKPPLRDLGETRIPYCPKWSMEALWAMIDCLQGKQLYAVSMAPAPEQIVTLYDDEQHPVH MPLVEMGLADKDE
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