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Report for CCDS44889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44889.1 Public Homo sapiens 12 SMAGP 24 110 108 CCDS HistoryNCBI Gene:57228Re-query CCDS DB by CCDS ID:44889.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398453.7 ENSP00000381471.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398453.7Link to Ensembl Protein Viewer:ENSP00000381471.2Re-query CCDS DB by Nucleotide ID:ENST00000398453Re-query CCDS DB by Protein ID:ENSP00000381471
Original member Current member EBI ENST00000603864.5 ENSP00000474892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000603864.5Link to Ensembl Protein Viewer:ENSP00000474892.1Re-query CCDS DB by Nucleotide ID:ENST00000603864Re-query CCDS DB by Protein ID:ENSP00000474892
Original member Current member EBI ENST00000603798.6 ENSP00000475068.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000603798.6Link to Ensembl Protein Viewer:ENSP00000475068.1Re-query CCDS DB by Nucleotide ID:ENST00000603798Re-query CCDS DB by Protein ID:ENSP00000475068
Original member Current member NCBI NM_001031628.2 NP_001026798.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031628.2Link to Protein Sequence:NP_001026798.1Re-query CCDS DB by Nucleotide ID:NM_001031628Re-query CCDS DB by Protein ID:NP_001026798Link to BLAST:NP_001026798.1
Original member Current member NCBI NM_001033873.1 NP_001029045.1 Accepted alive Link to Nucleotide Sequence:NM_001033873.1Link to Protein Sequence:NP_001029045.1Re-query CCDS DB by Nucleotide ID:NM_001033873Re-query CCDS DB by Protein ID:NP_001029045Link to BLAST:NP_001029045.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026798.1 97 Q0VAQ4 97 100% 0 0
NP_001029045.1 97 Q0VAQ4 97 100% 0 0

Chromosomal Locations for CCDS 44889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 51245941 51246119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51246751 51246831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 51269245 51269278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGACCAGCCTCCTGACTACTCCTTCTCCAAGAGAAGAACTGATGACCACCCCAATTTTACAGCCCACTG
AGGCCCTGTCCCCAGAAGATGGAGCCAGCACAGCACTCATTGCAGTTGTTATCACCGTTGTCTTCCTCAC
CCTGCTCTCGGTCGTGATCTTGATCTTCTTTTACCTGTACAAGAACAAAGGCAGCTACGTCACCTATGAA
CCTACAGAAGGTGAGCCCAGTGCCATCGTCCAGATGGAGAGTGACTTGGCCAAGGGCAGCGAGAAAGAGG
AATATTTCATCTAA

Translation (97 aa):
MTSLLTTPSPREELMTTPILQPTEALSPEDGASTALIAVVITVVFLTLLSVVILIFFYLYKNKGSYVTYE
PTEGEPSAIVQMESDLAKGSEKEEYFI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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