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Report for CCDS14980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14980.1 Public Mus musculus 1 Trak2 23 108 98 CCDS HistoryNCBI Gene:70827Re-query CCDS DB by CCDS ID:14980.1Re-query CCDS DB by GeneID:70827See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027186.11 ENSMUSP00000027186.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027186.11Link to Ensembl Protein Viewer:ENSMUSP00000027186.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027186Re-query CCDS DB by Protein ID:ENSMUSP00000027186
Original member Current member NCBI NM_172406.3 NP_765994.2 Accepted alive Link to Nucleotide Sequence:NM_172406.3Link to Protein Sequence:NP_765994.2Re-query CCDS DB by Nucleotide ID:NM_172406Re-query CCDS DB by Protein ID:NP_765994Link to BLAST:NP_765994.2

Chromosomal Locations for CCDS 14980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58903504 58904182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58906706 58906811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58908523 58908789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58909950 58910248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58911636 58911836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58912186 58912262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58915686 58915823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58918772 58918846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58919221 58919351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58921074 58921152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58921680 58921889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58923522 58923638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58926651 58926727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58935746 58935940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58946247 58946337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGAGTCAATCCCAGAATGCCATTTTCAAATCACGAACAGGTGAAGCAAACCTCATGAGTAGCAATCATA
GAGACTCGGAGAGCATCACTGATGTCTGCTCCAACGAGGATCTCCCTGAAGTCGAGCTGGTGAACTTGCT
AGAAGAACAGCTGCCACAGTATAAGCTAAGAGTAGATTCTCTTTTTCTCTATGAAAACCAAGACTGGGCA
CAGTCATCACACCAGCAGCAGGATGCGCCTGAGACCCTCTCCCCAGTCCTTGCTGAAGAGACGTTCCGCT
ACATGATTCTAGGCACAGACAGAGTGGAGCAGATGACCAAAACCTACAATGACATTGACATGGTCACACA
TCTCCTGGCAGAGAGGGATCGAGATCTAGAGCTAGCTGCCCGAATTGGGCAAGCTCTTTTAAAGCGAAAC
CATGTCTTATCTGAGCAGAATGAAGCTCTGGAGGAGCAGTTGGGACAAGCCTTTGATCAAGTTAATCAGC
TGCAGCACGAGCTCTCCAAGAAAGACGAGCTGCTCCGAATCGTCTCTATTGCCTCCGAGGAGAGTGAAAC
GGATTCTAGCTGCTCCACGCCCCTTCGGTTCAATGAGTCCTTCAGCTTATCTCAGGGGCTGCTGCAGCTG
GACATGCTGCATGAGAAGCTCAGGGAGCTGGAAGAAGAGAACATGGCCCTACGATCCAAGGCTTGTCATA
TCAAGACAGAAACATTTACCTATGAAGAGAAGGAACAACAGCTCGTCAATGACTGTGTTAAAGAACTTCG
TGAGACCAATGCACAGATGTCCAGAATGACTGAAGAGCTGTCGGGAAAGAGCGACGAGCTGCTCCGGTAC
CAAGAGGAGATCTCCTCCCTGCTGTCTCAGATCGTAGACCTTCAGCACAAACTGAAAGAGCATGTGATCG
AGAAGGAAGAACTAAGACTTCACCTGCAGGCTTCCAAAGATGCCCAGCGACAGCTGACAATGGAGCTTCA
TGAGTTACAGGACAGGAACATGGAATGCCTGGGAATGTTACATGAGTCCCAAGAAGAAATAAAAGAGCTT
CGTAGCAAGTCCGGCCCTTCTGCTCATCTCTGCTTCTCCCAGTCTTACGGCGTTTTTACAGGGGAATCGT
TGGCAGCTGAGATTGAAGGGACCATGCGTAAAAAGCTGAGTTTGGATGAGGAATCTGTGTCTAAACAAAA
GGCCCAGCAGAAACGGGTGTTTGATACTGTCAAGGTTGCCAATGACACTCGGGGCCGCTCTGTCACCTTC
CCAGTCCTGCTACCCATCCCAGGCTCCAACCGTTCAAGTGTCATCATGACAGCAAAGCCCTTTGAGTCTG
GTGTCCAGCCAGCAGAGGACAAAACACTCCTGAGCCCAGGGGGCAGCACAGAGGTTCCAGGAAACTCGCA
GCCCACAAACCCCCCAGGATCCCCTGAAGATAGTGATCTGGCTACTGCATTGCATCGCCTCAGCCTGAGA
AGACAGAACTACCTAAGTGAGAAGCAGTTCTTTGCTGAGGAATGGGAACGGAAGATCCAGATCTTGGCTG
AGCAGGAGGAAGAAGTCAGCAGCTGTGACGCCCCCACGGAGAACCTTGCCTCAGTCTGCACTGACCAGTC
GGAGACCACGGACCTCGGCAGTGCCAGCTGCCTTCGAGGCTTCATGCCAGAGAAGTTACAGATTGTCAAG
CCCCTAGAAGGATCACAGACTCTGCATCACTGGCAGCAGCTTGCTCAGCCGAACTTGGGAACCATTCTTG
ATCCACGCCCAGGCGTCATCACTAAAGGCTTCACACAGGTGCCCAAGGATGTTGTCTACCACATCTCGGA
CTTAGAGGAGGATGAAGAAGAGGGCATCACTTTTCAGGTTCAGCAGCCTCTTCAACTGGAGCAGAAACCT
GCACTGCCCACGCCAGTAACGGGAATCTTTCTGCCGCCCATGACCTCAGCGGGTGGACCAGGTACAGTTG
CAACTTCGAACCCAGGAAAGTGTCTCTCATTCACCAACTCGACATTCACCTTCACCACCTGCAGGATCTT
ACATCCCTCTGACATCACTCAGGTCACCCCTAGCTCCGGTTTCCCATCACTGGCCTGTGGCAGTAGTGCG
AGCAGCTCATCCAACACGGCTGTGAACTCCCCTGCTGCATCCTATAGACTAAGCATTGGCGAATCCATCA
CAAACCGCAGGGACTCCACCATAACCTTCAGTAGCACCAGGAGCTTAGCCAAACTCCTGCAGGAGCGAGG
CATCTCTGCTAAAGTGTACCACAGCCCGGCTTCAGAAAACCCCCTCCTGCAGCCTTGCCCCAAGGCCCTG
GCCACCCCCTCCACACCACCAAATTCCCCAGCGCAGTCACCGTGCTCCTCCCCCTTGCCCTTTGAACCCC
GAGTGCATGTCTCCGAGAATTTCTTGGCTTCCCGACCAGCTGAAACATTCCTGCAAGAAATGTATGGCTT
GAGACCTTCAAGGGCCCCTCCTGATGTTGGACAGCTGAAGATGAACTTGGTAGACAGGCTGAAGAGGCTG
GGAATAGCCAGGGTGGTCAAGACCCCTGATCCCCAGGAGAACGGAAAAAGCCGAGAAGCAGAAATGGGTC
TTCAAAAACCAGACCCTGCTGTTTATTTAAATTCAGGTGGCAGTTTATTGTGTGGACTGAGGAGGAATCA
GAGTCTTCCGGTCATGATGGGTAGCTTTGGAGCCCCAGTTTGCACAACCTCACCCAAAATGGGTATCCTG
AAGGAAGATTGA

Translation (913 aa):
MSQSQNAIFKSRTGEANLMSSNHRDSESITDVCSNEDLPEVELVNLLEEQLPQYKLRVDSLFLYENQDWA
QSSHQQQDAPETLSPVLAEETFRYMILGTDRVEQMTKTYNDIDMVTHLLAERDRDLELAARIGQALLKRN
HVLSEQNEALEEQLGQAFDQVNQLQHELSKKDELLRIVSIASEESETDSSCSTPLRFNESFSLSQGLLQL
DMLHEKLRELEEENMALRSKACHIKTETFTYEEKEQQLVNDCVKELRETNAQMSRMTEELSGKSDELLRY
QEEISSLLSQIVDLQHKLKEHVIEKEELRLHLQASKDAQRQLTMELHELQDRNMECLGMLHESQEEIKEL
RSKSGPSAHLCFSQSYGVFTGESLAAEIEGTMRKKLSLDEESVSKQKAQQKRVFDTVKVANDTRGRSVTF
PVLLPIPGSNRSSVIMTAKPFESGVQPAEDKTLLSPGGSTEVPGNSQPTNPPGSPEDSDLATALHRLSLR
RQNYLSEKQFFAEEWERKIQILAEQEEEVSSCDAPTENLASVCTDQSETTDLGSASCLRGFMPEKLQIVK
PLEGSQTLHHWQQLAQPNLGTILDPRPGVITKGFTQVPKDVVYHISDLEEDEEEGITFQVQQPLQLEQKP
ALPTPVTGIFLPPMTSAGGPGTVATSNPGKCLSFTNSTFTFTTCRILHPSDITQVTPSSGFPSLACGSSA
SSSSNTAVNSPAASYRLSIGESITNRRDSTITFSSTRSLAKLLQERGISAKVYHSPASENPLLQPCPKAL
ATPSTPPNSPAQSPCSSPLPFEPRVHVSENFLASRPAETFLQEMYGLRPSRAPPDVGQLKMNLVDRLKRL
GIARVVKTPDPQENGKSREAEMGLQKPDPAVYLNSGGSLLCGLRRNQSLPVMMGSFGAPVCTTSPKMGIL
KED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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