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Report for CCDS35885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35885.1 Public Mus musculus 10 Rpf2 23 108 98 CCDS HistoryNCBI Gene:67239Re-query CCDS DB by CCDS ID:35885.1Re-query CCDS DB by GeneID:67239See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045114.12 ENSMUSP00000035456.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045114.12Link to Ensembl Protein Viewer:ENSMUSP00000035456.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045114Re-query CCDS DB by Protein ID:ENSMUSP00000035456
Original member Current member NCBI NM_001042556.1 NP_001036021.1 Accepted alive Link to Nucleotide Sequence:NM_001042556.1Link to Protein Sequence:NP_001036021.1Re-query CCDS DB by Nucleotide ID:NM_001042556Re-query CCDS DB by Protein ID:NP_001036021Link to BLAST:NP_001036021.1

Chromosomal Locations for CCDS 35885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40223741 40223920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40225297 40225441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40227559 40227661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40233108 40233207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40234822 40234898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40236123 40236204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40239748 40239787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40243856 40243893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40244585 40244641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGCTGATTAAAGGCGGAAATGCAAATGCAACCGTGACACAAGTACTCAGAGACATGTATGCACTGAAGA
AACCATATGGAGTTCTCTATAAAAAGAAAAATATTACAAGACCATTTGAGGATCAGACGTCACTGGAGTT
CTTTTCAAAGAAGTCAGACTGCTCTTTATTCATGTTTGGCTCCCATAACAAGAAGAGGCCAAATAACCTA
GTAATAGGTCGTATGTATGACTACCATGTGCTGGATATGATTGAATTAGGTATTGAGAAATTTGTGTCTC
TAAAAGATATTAAGACTAGTAAGTGCCCCGAGGGAACAAAACCGATGTTGATATTTGCTGGTGATGATTT
TGATGTAACAGAAGACTTCAGAAGATTAAAAAATCTTCTTATTGATTTCTTCAGAGGCCCCACAGTATCG
AACGTCCGGCTGGCTGGATTAGAGTATGTTCTGCACTTCACTGCACTGAATGGGAAGGTTTACTTCCGAA
GCTATAAGCTGCTGTTGAAGAAATCTGGGTGCAGAACACCGCGAATCGAGCTAGAAGAGATGGGACCATC
ACTGGACCTGGTCATGAGGAGGACACACCTAGCATCAGATGACCTTTATAAACTGTCCATGAAAGTGCCC
AAGGCTCTCAAGCCAAAGAAGAGAAAGAATATCTCTCAGGATACTTTTGGCACAACATTTGGAAGGATTC
ATATGCAAAAGCAAGACTTAAGCAAACTACAAACGAGGAAAATGAAGGGGTTGAAGAAGCGACCTGCAGA
GAATGGAGTAGACGACCAGGGGAAAAAATCAAAGAGAATTAAGAAAAATTGA

Translation (273 aa):
MLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNITRPFEDQTSLEFFSKKSDCSLFMFGSHNKKRPNNL
VIGRMYDYHVLDMIELGIEKFVSLKDIKTSKCPEGTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVS
NVRLAGLEYVLHFTALNGKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKLSMKVP
KALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQTRKMKGLKKRPAENGVDDQGKKSKRIKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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