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Report for CCDS70140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70140.1 Public Mus musculus 11 Sun3 23 108 98 CCDS HistoryNCBI Gene:194974Re-query CCDS DB by CCDS ID:70140.1Re-query CCDS DB by GeneID:194974See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043377.5 ENSMUSP00000045199.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043377.5Link to Ensembl Protein Viewer:ENSMUSP00000045199.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043377Re-query CCDS DB by Protein ID:ENSMUSP00000045199
Original member Current member NCBI NM_001290519.1 NP_001277448.1 Accepted alive Link to Nucleotide Sequence:NM_001290519.1Link to Protein Sequence:NP_001277448.1Re-query CCDS DB by Nucleotide ID:NM_001290519Re-query CCDS DB by Protein ID:NP_001277448Link to BLAST:NP_001277448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277448.1 320 Q5SS91-1 320 100% 0 0

Chromosomal Locations for CCDS 70140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 9016237 9016356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9018147 9018239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9021752 9021919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9023294 9023409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9028033 9028117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9029319 9029490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9030235 9030275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9031435 9031538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9038257 9038318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 9039558 9039559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTTAACTCGATCATGGAAGATTATCCTAAGTACAGTGTTTATATCAACTTTTCTTCTTGTTGGACTTC
TAAATCATCAGTGGCTTAAAGAAACAGAGTTTCCTCAAAAACCCAGGCAATTATACACTGTCATTGCCGA
ATATGGCTCCCGGCTCTATAATTACCAGGCCAGACTCCGCATGCCTAAGGAGCAACAGGAACTTTTAAAG
AAAGAAAGCCAGACTTTGGAGAACAATTTTCGTGAAATTCTGTTTTTAATTGAACAAATAGATGTTCTGA
AGGCGTTGCTTAAAGACATGAAGGACGGCGTACACAATCACAGCTTGCCTGTTCACCGAGATGCTGTGCA
GGACCAGGCCACTACTGACGTTCTAGATGAGGAAATGTCAAACTTGGTACATTATGTGCTTAAAAAGTTC
AGAGGGGACCAAATACAGTTGGCTGATTATGCCTTGAAGTCAGCAGGAGCCTCTGTCATTGAAGCTGGGA
CCTCAGAAAGTTACAAAAATAATAAAGCAAAACTGTACTGGCATGGCATAGGGTTCCTCAACTATGAGAT
GCCTCCGGATATGATACTTCAGCCAGATGTCCACCCTGGGAAGTGCTGGGCCTTTCCAGGTTCCCAGGGT
CACATCCTGATTAAGCTCGCCAGGAAGATCATCCCAACAGCAGTTACCATGGAGCACATCTCGGAGAAGG
TGTCCCCTTCAGGAAACATCTCAAGTGCACCCAAGGAGTTCTCTGTCTATGGCGTTATGAAGAAATGTGA
AGGAGAAGAAATATTCCTAGGTCAGTTTATTTATAACAAAATGGAAGCAACCATTCAAACATTTGAGCTC
CAGAATGAAGCTTCTGAATCTTTGCTATGTGTAAAACTTCAAATCCTTAGCAACTGGGGACATCCAAAGT
ATACGTGTTTGTACCGATTTAGAGTCCACGGCATCCCCAGTGATTACACTTAG

Translation (320 aa):
MLTRSWKIILSTVFISTFLLVGLLNHQWLKETEFPQKPRQLYTVIAEYGSRLYNYQARLRMPKEQQELLK
KESQTLENNFREILFLIEQIDVLKALLKDMKDGVHNHSLPVHRDAVQDQATTDVLDEEMSNLVHYVLKKF
RGDQIQLADYALKSAGASVIEAGTSESYKNNKAKLYWHGIGFLNYEMPPDMILQPDVHPGKCWAFPGSQG
HILIKLARKIIPTAVTMEHISEKVSPSGNISSAPKEFSVYGVMKKCEGEEIFLGQFIYNKMEATIQTFEL
QNEASESLLCVKLQILSNWGHPKYTCLYRFRVHGIPSDYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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