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Report for CCDS24916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24916.1 Public Mus musculus 11 Plscr3 23 108 98 CCDS HistoryNCBI Gene:70310Re-query CCDS DB by CCDS ID:24916.1Re-query CCDS DB by GeneID:70310See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019605.3 ENSMUSP00000019605.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019605.3Link to Ensembl Protein Viewer:ENSMUSP00000019605.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019605Re-query CCDS DB by Protein ID:ENSMUSP00000019605
Original member Current member EBI ENSMUST00000108632.7 ENSMUSP00000104272.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108632.7Link to Ensembl Protein Viewer:ENSMUSP00000104272.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108632Re-query CCDS DB by Protein ID:ENSMUSP00000104272
Original member Current member EBI ENSMUST00000108633.8 ENSMUSP00000104273.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108633.8Link to Ensembl Protein Viewer:ENSMUSP00000104273.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108633Re-query CCDS DB by Protein ID:ENSMUSP00000104273
Original member Current member NCBI NM_001168497.1 NP_001161969.1 Accepted alive Link to Nucleotide Sequence:NM_001168497.1Link to Protein Sequence:NP_001161969.1Re-query CCDS DB by Nucleotide ID:NM_001168497Re-query CCDS DB by Protein ID:NP_001161969Link to BLAST:NP_001161969.1
Original member Current member NCBI NM_023564.4 NP_076053.1 Accepted alive Link to Nucleotide Sequence:NM_023564.4Link to Protein Sequence:NP_076053.1Re-query CCDS DB by Nucleotide ID:NM_023564Re-query CCDS DB by Protein ID:NP_076053Link to BLAST:NP_076053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161969.1 296 Q9JIZ9 296 100% 0 0
NP_076053.1 296 Q9JIZ9 296 100% 0 0

Chromosomal Locations for CCDS 24916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69847069 69847075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69847335 69847573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69847657 69847699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69847803 69848023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69848214 69848375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69850012 69850173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69850344 69850400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGCAGGCTACTTGCCCCCCAAAGGCTATGCCCCTTCACCCCCACCTCCCTACCCCGTGCCATCTGGGT
ATCCAGAGCCGGTGGCTCTGCATCCTGGACCGGGACAAGCTCCAGTGCCCACCCAGGTGCCTGCCCCTGC
TCCCGGCTTCGCTCTCTTCCCCTCGCCAGGCCCAGTGGCTCCAGGGCCTCCTGCTCCTTTCGTGCCATTG
CCAGGGGTGCCTCCTGGCCTCGAATTCCTAGTGCAGATTGATCAAATCTTGATTCATCAGAAGGCTGAAC
GAGTGGAAACGTTCCTAGGCTGGGAGACCTGTAATATGTATGAACTTCGCTCCGGAACCGGACAGCAACT
GGGTCAGGCAGCTGAAGAGAGCAACTGTTGTGCCCGCCTGTGCTGTGGTGCCCGCCGACCATTTCGAATC
CGCCTAGCGGACCCTGGGGACCGCGAGGTGCTCCGGCTCCTCCGCCCACTTCATTGTGGCTGCAGCTGCT
GCCCCTGTGGTCTTCAGGAGATGGAAGTCCAGGCTCCACCTGGCACCACCATTGGCCATGTGCTACAGAC
CTGGCATCCCTTCCTTCCTAAGTTTTCCATCCTGGATGCTGATCGCCAACCTGTTCTACGAGTTGTAGGG
CCTTGCTGGACTTGTGGCTGTGGTACAGACACCAACTTTGAGGTGAAGACTAAGGATGAATCGCGAAGTG
TGGGCCGCATCAGCAAGCAGTGGGGAGGGCTGCTCCGAGAAGCCCTCACAGATGCCGATGACTTTGGCCT
CCAATTCCCAGTCGATCTAGATGTGAAAGTGAAGGCCGTACTGCTGGGAGCCACGTTCCTCATCGATTAT
ATGTTCTTCGAGAAGAGAGGAGGCGCAGGACCCTCTGCCATCACCAGTTAG

Translation (296 aa):
MAGYLPPKGYAPSPPPPYPVPSGYPEPVALHPGPGQAPVPTQVPAPAPGFALFPSPGPVAPGPPAPFVPL
PGVPPGLEFLVQIDQILIHQKAERVETFLGWETCNMYELRSGTGQQLGQAAEESNCCARLCCGARRPFRI
RLADPGDREVLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSILDADRQPVLRVVG
PCWTCGCGTDTNFEVKTKDESRSVGRISKQWGGLLREALTDADDFGLQFPVDLDVKVKAVLLGATFLIDY
MFFEKRGGAGPSAITS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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