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Report for CCDS48882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48882.1 Public Mus musculus 11 Msi2 23 108 98 CCDS HistoryNCBI Gene:76626Re-query CCDS DB by CCDS ID:48882.1Re-query CCDS DB by GeneID:76626See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107908.1 ENSMUSP00000103541.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107908.1Link to Ensembl Protein Viewer:ENSMUSP00000103541.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107908Re-query CCDS DB by Protein ID:ENSMUSP00000103541
Original member Current member NCBI NM_001201341.1 NP_001188270.1 Accepted alive Link to Nucleotide Sequence:NM_001201341.1Link to Protein Sequence:NP_001188270.1Re-query CCDS DB by Nucleotide ID:NM_001201341Re-query CCDS DB by Protein ID:NP_001188270Link to BLAST:NP_001188270.1

Chromosomal Locations for CCDS 48882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88687456 88687548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88687877 88687948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88712438 88712479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88716510 88716594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88717290 88717371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88717705 88717745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88718029 88718090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGAGGCAAATGGGAGCCCAGGCACCTCGGGCAGCGCCAACGACTCCCAGCACGACCCCGGTAAAATGT
TTATCGGTGGACTGAGCTGGCAGACCTCACCAGATAGCCTTAGAGACTATTTTAGCAAATTTGGAGAAAT
TAGAGAATGTATGGTCATGAGAGATCCCACAACGAAACGCTCCAGAGGCTTCGGTTTCGTCACCTTCGCA
GACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACGATTGACCCAA
AAGTTGCATTTCCTCGTCGAGCGCAACCTAAGAGTCAAGAGCAGGGAGGCTCCTGGAAACGCACATGGAC
CACGGTCCAAGCTCGGGCTGCCTCAGGTGACCAGAAAAAGGTTGGCTTGTCAGACTCTGCTGCCCTCTTC
CCGGCTCTCCCCGTCCCTCTGCGGCCTGGCAGACGAGGCTTTAGAGGGGCCGTCTGA

Translation (158 aa):
MEANGSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA
DPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKSQEQGGSWKRTWTTVQARAASGDQKKVGLSDSAALF
PALPVPLRPGRRGFRGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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