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Report for CCDS88257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88257.1 Public Mus musculus 11 Becn1 23 108 98 CCDS HistoryNCBI Gene:56208Re-query CCDS DB by CCDS ID:88257.1Re-query CCDS DB by GeneID:56208See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041403.11 ENSMUSP00000040094.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041403.11Link to Ensembl Protein Viewer:ENSMUSP00000040094.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041403Re-query CCDS DB by Protein ID:ENSMUSP00000040094
Original member Current member EBI ENSMUST00000170502.1 ENSMUSP00000128413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170502.1Link to Ensembl Protein Viewer:ENSMUSP00000128413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170502Re-query CCDS DB by Protein ID:ENSMUSP00000128413
Original member Current member NCBI NM_001359821.1 NP_001346750.1 Accepted alive Link to Nucleotide Sequence:NM_001359821.1Link to Protein Sequence:NP_001346750.1Re-query CCDS DB by Nucleotide ID:NM_001359821Re-query CCDS DB by Protein ID:NP_001346750Link to BLAST:NP_001346750.1

Chromosomal Locations for CCDS 88257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101296194 101296316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101299009 101299076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101301728 101301854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGAGGGGTCTAAGGCGTCCAGCAGCACCATGCAGGTGAGCTTCGTGTGCCAGCGCTGTAGCCAGCCTC
TGAAACTGGACACGAGCTTCAAGATCCTGGACCGGGTCACCATCCAGGAACTCACAGCTCCATTACTTAC
CACAGCCCAGGCGAAACCAGGAGAGACCCAGGAGGAAGAGGCTAACTCAGGAGAGGAGCCATTTATTGAA
ACTCGCCAGGATGGTGTCTCTCGAAGATTCATCCCCCCAGCCAGGTGCTTACTATTCCTCAGTCCCCTGT
TTCTCACCAAAGGAATTTTAATTAGGACATGGGACTAG

Translation (105 aa):
MEGSKASSSTMQVSFVCQRCSQPLKLDTSFKILDRVTIQELTAPLLTTAQAKPGETQEEEANSGEEPFIE
TRQDGVSRRFIPPARCLLFLSPLFLTKGILIRTWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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