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Report for CCDS26091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26091.1 Public Mus musculus 12 Sel1l 23 108 98 CCDS HistoryNCBI Gene:20338Re-query CCDS DB by CCDS ID:26091.1Re-query CCDS DB by GeneID:20338See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26091.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021347.11 ENSMUSP00000021347.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021347.11Link to Ensembl Protein Viewer:ENSMUSP00000021347.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021347Re-query CCDS DB by Protein ID:ENSMUSP00000021347
Original member Current member NCBI NM_001039089.1 NP_001034178.1 Accepted alive Link to Nucleotide Sequence:NM_001039089.1Link to Protein Sequence:NP_001034178.1Re-query CCDS DB by Nucleotide ID:NM_001039089Re-query CCDS DB by Protein ID:NP_001034178Link to BLAST:NP_001034178.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034178.1 790 Q9Z2G6-1 790 100% 0 0

Chromosomal Locations for CCDS 26091.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 91809844 91810053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91811877 91812005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91813832 91814004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91814619 91814693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91814974 91815139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91815766 91815914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91816221 91816308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91817282 91817344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91818219 91818296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91820042 91820110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91823534 91823590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91824820 91824974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91825297 91825378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91826505 91826564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91826652 91826705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91830687 91830849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91831569 91831674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91833055 91833222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91841638 91841854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91843226 91843263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91848959 91849031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGCAGGTCCGCGTCAGGCTGTCGTTGCTGCTGCTCTGCGCGGTGCTCCTGGGCTCGGCAGCCGCGACCT
CGGATGACAAAACTAACCAGGATGACTCCTTAGATTCCAAGAGTTCTTTGCCCACAGATGAGTCAGTGAA
GGACCACACCACCACGGGCAAAGTAGTTGCTGGCCAGATATTTGTTGATTCTGAAGAAGCAGAAGTGGAA
TCCCTTCTTCAGGACGAGGAAGATAGCTCCAAGACCCAGGAGGAAGAGATCAGCTTTTTAGAATCTCCGA
ATCCAAGCAGCAAGACCTACGAAGAACTAAAGAGAGTGCGGAAGCCAGTCTTGACTGCCATTGAAGGTAC
GGCGCACGGGGAGCCCTGCCACTTCCCTTTCCTTTTCCTGGATAAGGAGTATGATGAGTGCACCTCAGAC
GGGAGGGAAGATGGCAGACTGTGGTGTGCCACAACCTATGACTACAAGACAGATGAGAAGTGGGGCTTCT
GCGAAACTGAAGAAGATGCTGCCAAAAGACGACAGATGCAGGAAGCAGAGATGATCTATCAGGCCGGGAT
GAAGATACTGAATGGAAGCAATAGGAAGAGCCAAAAGAGAGAAGCATATCGGTACCTTCAGAAGGCAGCA
GGCATGAATCACACCAAAGCCCTGGAGAGAGTGTCCTATGCTCTCTTGTTTGGTGATTACCTCACACAGA
ATATCCAGGCAGCCAAAGAGATGTTTGAGAAACTGACTGAGGAAGGGTCTCCCAAAGGACAGACTGGTCT
TGGCTTTCTCTACGCTTCTGGGCTTGGTGTTAATTCAAGTCAGGCAAAGGCTCTTGTATATTATACTTTC
GGAGCTCTTGGAGGCAACCTGATAGCCCATATGATTTTGGGTTACCGCTACTGGGCTGGCATCGGAGTCC
TCCAGAGTTGTGAGTCGGCACTGACCCATTATCGTCTTGTTGCCAATCATGTTGCTAGTGATATCTCCCT
AACTGGAGGCTCTGTAGTCCAGAGAATACGGCTGCCCGATGAAGTGGAAAACCCGGGGATGAACAGTGGG
ATGCTGGAAGAAGACCTGATTCAGTATTACCAGTTCCTAGCTGAGAAGGGTGACGTCCAAGCACAGGTTG
GCCTGGGACAGCTGCATCTGCATGGAGGGCGTGGAGTAGAACAGAATCACCAGAGAGCGTTTGACTACTT
CAACTTAGCAGCAAATGCTGGCAATTCACATGCTATGGCCTTCCTGGGAAAGATGTATTCTGAAGGAAGT
GACATCGTACCTCAGAGTAATGAGACGGCACTTCACTACTTTAAGAAAGCTGCTGACATGGGCAACCCCG
TGGGACAGAGCGGGCTTGGAATGGCCTACCTCTACGGAAGAGGCGTTCAAGTTAATTATGACCTGGCCCT
CAAGTATTTCCAGAAAGCTGCTGAGCAAGGCTGGGTGGACGGGCAGCTGCAGCTCGGCTCTATGTACTAC
AATGGCATTGGAGTCAAGAGAGATTATAAGCAGGCCTTGAAGTATTTTAATCTGGCTTCTCAAGGAGGCC
ATATCTTGGCTTTCTATAACCTCGCACAGATGCACGCCAGCGGCACAGGGGTGATGCGGTCCTGTCACAC
TGCAGTGGAGTTGTTTAAGAATGTGTGTGAGCGAGGTCGCTGGTCAGAGAGACTGATGACTGCCTACAAC
AGCTATAAGGATGAGGACTACAATGCTGCAGTGGTCCAGTACCTCCTGCTGGCTGAGCAGGGCTACGAGG
TGGCGCAGAGCAACGCAGCCTTCATCCTCGACCAGAGAGAAGCAACCATTGTAGGTGAGAATGAAACTTA
CCCCAGAGCTTTACTGCATTGGAACAGGGCCGCCTCCCAAGGTTACACTGTGGCTAGAATTAAGCTTGGA
GACTACCACTTCTATGGCTTTGGCACTGATGTGGATTATGAGACCGCATTTATTCATTACCGCCTGGCTT
CTGAGCAGCAGCACAGCGCCCAAGCTATGTTTAACCTGGGCTACATGCACGAGAAGGGCCTAGGCATTAA
ACAGGACATTCACCTTGCAAAACGCTTTTATGACATGGCAGCCGAAGCTAGCCCAGATGCACAAGTACCT
GTGTTCCTCGCACTCTGCAAATTAGGTGTCGTCTATTTCTTACAGTACATACGGGAAGCAAACATTCGAG
ATCTATTCACACAACTGGATATGGACCAGCTTTTGGGACCCGAGTGGGACCTTTACCTCATGACCATCAT
TGCACTGCTCTTGGGTACAGTCATAGCTTACAGGCAGCGACAGCACCAGGACATACCAGTTCCCAGGCCC
CCAGGGCCACGGCCGGCTCCTCCCCAGCAGGAAGGACCACCAGAGCAGCAGCCACCACAGTAG

Translation (790 aa):
MQVRVRLSLLLLCAVLLGSAAATSDDKTNQDDSLDSKSSLPTDESVKDHTTTGKVVAGQIFVDSEEAEVE
SLLQDEEDSSKTQEEEISFLESPNPSSKTYEELKRVRKPVLTAIEGTAHGEPCHFPFLFLDKEYDECTSD
GREDGRLWCATTYDYKTDEKWGFCETEEDAAKRRQMQEAEMIYQAGMKILNGSNRKSQKREAYRYLQKAA
GMNHTKALERVSYALLFGDYLTQNIQAAKEMFEKLTEEGSPKGQTGLGFLYASGLGVNSSQAKALVYYTF
GALGGNLIAHMILGYRYWAGIGVLQSCESALTHYRLVANHVASDISLTGGSVVQRIRLPDEVENPGMNSG
MLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGS
DIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYY
NGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYN
SYKDEDYNAAVVQYLLLAEQGYEVAQSNAAFILDQREATIVGENETYPRALLHWNRAASQGYTVARIKLG
DYHFYGFGTDVDYETAFIHYRLASEQQHSAQAMFNLGYMHEKGLGIKQDIHLAKRFYDMAAEASPDAQVP
VFLALCKLGVVYFLQYIREANIRDLFTQLDMDQLLGPEWDLYLMTIIALLLGTVIAYRQRQHQDIPVPRP
PGPRPAPPQQEGPPEQQPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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