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Report for CCDS88413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88413.1 Public Mus musculus 12 Sp4 23 108 98 CCDS HistoryNCBI Gene:20688Re-query CCDS DB by CCDS ID:88413.1Re-query CCDS DB by GeneID:20688See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026367.10 ENSMUSP00000026367.10 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026367.10Link to Ensembl Protein Viewer:ENSMUSP00000026367.10Re-query CCDS DB by Nucleotide ID:ENSMUST00000026367Re-query CCDS DB by Protein ID:ENSMUSP00000026367
Original member Current member NCBI NM_001166385.2 NP_001159857.2 Accepted alive Link to Nucleotide Sequence:NM_001166385.2Link to Protein Sequence:NP_001159857.2Re-query CCDS DB by Nucleotide ID:NM_001166385Re-query CCDS DB by Protein ID:NP_001159857Link to BLAST:NP_001159857.2

Chromosomal Locations for CCDS 88413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118238147 118238394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118254410 118254603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118261727 118261955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118298638 118300192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118300699 118300808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118301227 118301233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGAGCGATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCT
CTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAGGACTCTCAGCCCTCTCCTCTGGC
TTTACTGGCAGCTACTTGCAGCAAAATAGGGACTCCTGGTGAAAATCAAGCAACTGGACAACAGCAGATT
ATTATAGATCCAAGCCAAGGATTGGTGCAACTTCAGAATCAGCCACAGCAGCTAGAACTGGTGACGACGC
AGCTTGCTGGAAACGCTTGGCAACTTGTTGCCTCCACTCCTCCTGCTTCAAAAGAAAATAACGTTTCTCA
GCCAGCTTCTAGTTCATCTAGTTCTTCCAGCAGTAATAACGGGAGTTCCTCTCCTACAAAAACTAAATCA
GGTAATCCTTCCACCCCTAATCAATTTCAAGTCATACAAGTACAAAACCCAAGCGGTAGTGTACAGTACC
AAGTGATCCCCCAACTTCAGACGGTGGAAGGCCAGCAAATTCAAATCAACCCAACTAGTAGTTCATCTCT
ACAGGATTTGCAGGGTCAAATTCAGCTCATTTCTGCAGGTAATAATCAAGCTATCCTCACGGCTGCTAAC
AGGACAGCTTCTGGGAATATCCTTGCTCAAAACCTGGCAAATCAGACAGTTCCAGTACAAATTAGACCTG
GCGTTTCAATACCATTGCAATTGCAGACCCTTCCTGGTACTCAGGCTCAAGTTGTAACAACCCTACCAAT
TAACATTGGAGGAGTGACTTTAGCTTTGCCAGTAATAAATAACGTGACTGCTGGAGGAGGGACTGGACAA
GTCGGCCAGCCTACTACTACTACTGACAGTGGGACTTCCAATGGGAATCAGTTAGTTTCTACGCCCACCA
CCAGCACTGCTCCCGCCAGTACTATGCCTGAATCGCCCTCCTCCTCTACTACCTGCACAACCACCGCATC
AACAACTCTGACGAGCAGTGACACATTAGTGAGCTCAGCAGATACAGGCCAGTATGCAAGCACATCAGCC
AGTAGTTCTGAACGCACCATTGAAGAACCACAGACACCTGCTGCTACTGAGTCTGAAGCCCAGAGCTCCA
GCCAGCTTCAGTCCAACGGAATTCAGAATGCACAAGACCAGTCAAATTCCCTTCAACAAGTACAGATTGT
AGGCCAGCCTATCCTGCAGCAAATCCAGATCCAGCAGCCTCAGCAGCAGATTATTCAAGCTATCCCACCA
CAGTCATTTCAGCTCCAGTCAGGGCAGACAATTCAGACCATCCAGCAGCAGCCTTTGCAGAATGTTCAAC
TTCAAGCAGTAAACCCGACTCAGGTACTTATCAGGGCTCCAACTTTAACACCTTCAGGGCAAATCAGCTG
GCAAACTGTCCAGGTCCAGAATATTCAAAGTCTTTCAAATTTGCAAGTTCAGAATGCTGGGTTATCCCAG
CAGTTAACCATCACCCCAGTGTCTTCAAGTGGTGGCACAACTCTTGCTCAGATTGCTCCTGTGGCTGTTG
CTGGTGCCCCAATAACTTTGAATACTGCCCAGCTTGCATCAGTGCCTAACCTTCAGACAGTGAGCGTTGC
CAACCTGGGTGCTGCGGGTGTTCAAGTTCAGGGAGTTCCAGTAACAATCACTAGTGTTGCAGGTCAACAG
CAAGGACAGGATGGAGTGAAAGTCCAACAAGCTACTATAGCTCCTGTAACGGTGGCAGTTGGAGGGATTG
CTAATGCGACAATAGGTGCTGTTAGTCCTGACCAACTCACACAAGTGCATTTGCAGCAAGGCCAGCAGAC
CTCTGATGCAGAGGTGCAACCTGGCAAGAGGCTCCGAAGAGTTGCCTGCTCCTGTCCTAACTGTAGGGAA
GGAGAAGGAAGCAGTGAACCAGGAAAGAAGAAGCAGCATGTTTGCCACATTGAAGGGTGTGGGAAAGTAT
ATGGCAAGACCTCTCACCTCCGAGCACATCTCCGATGGCACACTGGAGAAAGACCGTTCATATGCAACTG
GATGTTTTGTGGCAAAAGATTCACAAGGAGCGATGAGCTTCAGAGACACAGAAGGACCCACACAGGTGAA
AAGAGATTTGAATGTCCAGAGTGTTCTAAAAGGTTTATGCGGAGTGATCACCTATCCAAGCATGTCAAAA
CTCACCAGAATAAGAAAGGAGGTGGGACAGCTCTTGCCATTGTTACCTCCGGAGAACTGGACTCATCTGT
TACAGAGGTGCTTGGCTCTCCACGGATTGTCACGGTTGCCGCCATTTCCCAAGATTCGAATCCAGCAACT
CCCAATGTTTCAACAAACATGGAAGAATTCTGA

Translation (780 aa):
MSDQKKEEEEEAAAAMATEGGKTSEPENNNKKPKTSGSQDSQPSPLALLAATCSKIGTPGENQATGQQQI
IIDPSQGLVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKENNVSQPASSSSSSSSSNNGSSSPTKTKS
GNPSTPNQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQINPTSSSSLQDLQGQIQLISAGNNQAILTAAN
RTASGNILAQNLANQTVPVQIRPGVSIPLQLQTLPGTQAQVVTTLPINIGGVTLALPVINNVTAGGGTGQ
VGQPTTTTDSGTSNGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTTLTSSDTLVSSADTGQYASTSA
SSSERTIEEPQTPAATESEAQSSSQLQSNGIQNAQDQSNSLQQVQIVGQPILQQIQIQQPQQQIIQAIPP
QSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQVLIRAPTLTPSGQISWQTVQVQNIQSLSNLQVQNAGLSQ
QLTITPVSSSGGTTLAQIAPVAVAGAPITLNTAQLASVPNLQTVSVANLGAAGVQVQGVPVTITSVAGQQ
QGQDGVKVQQATIAPVTVAVGGIANATIGAVSPDQLTQVHLQQGQQTSDAEVQPGKRLRRVACSCPNCRE
GEGSSEPGKKKQHVCHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHTGE
KRFECPECSKRFMRSDHLSKHVKTHQNKKGGGTALAIVTSGELDSSVTEVLGSPRIVTVAAISQDSNPAT
PNVSTNMEEF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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