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Report for CCDS26639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26639.1 Public Mus musculus 13 Cep72 23 108 98 CCDS HistoryNCBI Gene:74470Re-query CCDS DB by CCDS ID:26639.1Re-query CCDS DB by GeneID:74470See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26639.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036456.7 ENSMUSP00000037788.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036456.7Link to Ensembl Protein Viewer:ENSMUSP00000037788.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036456Re-query CCDS DB by Protein ID:ENSMUSP00000037788
Original member Current member NCBI NM_028959.3 NP_083235.3 Accepted alive Link to Nucleotide Sequence:NM_028959.3Link to Protein Sequence:NP_083235.3Re-query CCDS DB by Nucleotide ID:NM_028959Re-query CCDS DB by Protein ID:NP_083235Link to BLAST:NP_083235.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083235.3 646 Q9D3R3-1 646 100% 0 0

Chromosomal Locations for CCDS 26639.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74038163 74038328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74040051 74040162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74043506 74043632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74047036 74047232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74048896 74049034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74050060 74050364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74051415 74051621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74052881 74053059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74054883 74054991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74058302 74058494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74059442 74059569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74062184 74062262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGCGCCAGGCCAGCGGTTGGTTTTGTGTGAAGAGACTGTACGAGAGCGCAGCGGCCTGGGTCCCCACC
GCGACCTGGCTGAACTTCGATCTTTATCTATTCCTGGAACATACCAAGAGAAGATTACTCACCTGGGAAA
CTCTCTGATGCACTTGACAGCTCTAAAATCCTTAGACCTCTCACGTAACTCCTTGGTTAGCCTTGAGGGT
ATACAGTATCTGGTCTCCTTGGAGAGTCTCAATCTCTACTACAACTGTATTTCTTCATTAGCAGAAGTAT
TTAGGCTCCACACCCTACTGGAGCTCCAGGACGTGGACTTCCGGCTTAACCCCGTTGTGAAGAATGAGTC
TGACTACCGCCTGTTTGTCGTGCACATGCTCCCGAAGCTCCGACAGCTAGATGACCGTCCTGTGAGAGAA
AGTGAGCGGAAAGCTTCCCAGCTTCATTTTGCCCCAGAAGATTCACTGAACTCAAAGGAGAACTTCTCAA
CCACTTTAACCGTTGGAAGACCACACCACCTCAGAAACAGATGTACTGAGACCTCGGCCAAAAAATGCTT
GGTCATGGATGCTGATGATGAGGCTGTCCTGAACCTTATTGCCGAGTGTGAATGGGACCTAAGCAATCCT
CCTGGGAACATGAGCTCCAGCCAAAAGGAACATGAAGCTGACCTCCATTATGCCCAAGAGTCCAGACATC
TGTTGAGTCCTTTGTCCATCCAGCACCAGTGTGGGGATTCAGCGAGGCGAGGCCATGAGAAGAAGAAAGT
CACCTCCAGAGGGTGTCCAGGTCATTCACCGCAGGACCAGCTCTGTGGGGAACTCCCCCTACAGCATGGC
TTGCCAGAGGCCTGCCATATGCACGTACAGCATGCCCGCATCACTTCACAGCCAGACTCTGTGGATGTTG
AGGACTGTGCTTCATCTGCTCAGAAATCAAGTTTGTCATCACAAAAAACAGTAAATCCTTTGCCTGTCCC
TGAAAAGTACAGGAAGCGAAGGATGCCTGGTGGGAGATTCCAGGTGCCTTCAGACCGGGAGTGTTTGAGC
TTCCTAGAGAGGGCTGACGGGCCCTCCAGCCTTGAGGACAGTCTAAGCAGACAGGATGGCTTGGAGGGCC
AGAGTCAGGTGGCCTTGTCTCACTCTGAGGCTTTGGAGGCTGAAGAGCGGACATCTCATGGCACAAGTGA
CCCCAGAGTGCTGTCTCCTAAACTCTGCTCGGCAGCGGTGCCTGAGCGGAGGTCCACTCTGGAAGTGGCC
CTTCTGGAGGCGCTTCTCGACCTGATAGACAGGTGCTCAAGTGGCAGTGGATCCCTGCATGGCAATGAGG
CCTTCCTTGCTCAGGCCAAGCATGTTTTGTCATCTCTTCAAGAGTTCACAGCAACTCGGGACAGTTCAGC
ACTTGAAAAGGAAGGAATTGGTTACCTATCTCTTGAAAATAAGACTCTGCAAAGCCGCCTTGCTGAGCAA
CAGCAACAGTATACTGCTACAGTGACCAAGATGACAGCAGAGCTCAATAATACAAAGAGGGAGCTGGACA
CATTGAGACAACATTTGGACAAATCATTGGAAGAGAATAGCCACTTAAAGTCTCTTCTGTACAATGTGAA
AAAAGAAGTAAAGACTGCAGACACTTCAACTGCACTCACTTTGCAGATCACTGGACTTCAGGCAAGTATG
AAGCAGCTCTCTGGGGAAGTTGTGGAGCTGAAGCAACACGTGGAGCACTATGACAAGATCCAGGAGCTCA
CACAGATGCTTCAAGAGAGCCACAGCTCCCTGGTAAGCACCAATGAGCATCTCCTGCAGGAGCTGAGCCG
CACACGGGCACAGCATAGAGCTGAGGTAGAGCAGATGCGCTGGAGCTTCCAGGAATTTAAGAAGACTACG
GCCCTGATCCCTCACCGTAGCTCCCGACGTGGGGGCCGGCAGTCCTGCTAG

Translation (646 aa):
MAPGQRLVLCEETVRERSGLGPHRDLAELRSLSIPGTYQEKITHLGNSLMHLTALKSLDLSRNSLVSLEG
IQYLVSLESLNLYYNCISSLAEVFRLHTLLELQDVDFRLNPVVKNESDYRLFVVHMLPKLRQLDDRPVRE
SERKASQLHFAPEDSLNSKENFSTTLTVGRPHHLRNRCTETSAKKCLVMDADDEAVLNLIAECEWDLSNP
PGNMSSSQKEHEADLHYAQESRHLLSPLSIQHQCGDSARRGHEKKKVTSRGCPGHSPQDQLCGELPLQHG
LPEACHMHVQHARITSQPDSVDVEDCASSAQKSSLSSQKTVNPLPVPEKYRKRRMPGGRFQVPSDRECLS
FLERADGPSSLEDSLSRQDGLEGQSQVALSHSEALEAEERTSHGTSDPRVLSPKLCSAAVPERRSTLEVA
LLEALLDLIDRCSSGSGSLHGNEAFLAQAKHVLSSLQEFTATRDSSALEKEGIGYLSLENKTLQSRLAEQ
QQQYTATVTKMTAELNNTKRELDTLRQHLDKSLEENSHLKSLLYNVKKEVKTADTSTALTLQITGLQASM
KQLSGEVVELKQHVEHYDKIQELTQMLQESHSSLVSTNEHLLQELSRTRAQHRAEVEQMRWSFQEFKKTT
ALIPHRSSRRGGRQSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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