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Report for CCDS88744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88744.1 Public Mus musculus 15 Otulinl 23 108 98 CCDS HistoryNCBI Gene:223433Re-query CCDS DB by CCDS ID:88744.1Re-query CCDS DB by GeneID:223433See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000226170.1 ENSMUSP00000153902.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226170.1Link to Ensembl Protein Viewer:ENSMUSP00000153902.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226170Re-query CCDS DB by Protein ID:ENSMUSP00000153902
Original member NCBI NM_001242424.1 NP_001229353.1 Updated not alive Link to Nucleotide Sequence:NM_001242424.1Link to Protein Sequence:NP_001229353.1Re-query CCDS DB by Nucleotide ID:NM_001242424Re-query CCDS DB by Protein ID:NP_001229353
Current member NCBI NM_001242424.2 NP_001229353.1 Accepted alive Link to Nucleotide Sequence:NM_001242424.2Link to Protein Sequence:NP_001229353.1Re-query CCDS DB by Nucleotide ID:NM_001242424Re-query CCDS DB by Protein ID:NP_001229353Link to BLAST:NP_001229353.1

Chromosomal Locations for CCDS 88744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 27657198 27657263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27658045 27658314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27659890 27660018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27662339 27662488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664344 27664435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664537 27664568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27664654 27664813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27681397 27681451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGAGGCGCCGAGGAGCGCGCCGCGGGAGCGGGAGCGCGCTCGGACCACCTCAGGAAGTGACCAAGTTC
ACTCCTGGATACTAGTTACAAGCCAAGTCCTTAGTGCTGCCTGGAGAATAGCAAGGGCCTTTGTGATGAC
GACGCTCTCTCCTCTGTCCGCTACCTTCAGCTACTTCAGAAGCCTGTATTTATACTTAGGGCATCAGCTG
AAATGGTGGATCGGCTATCTACAGAGAAAGTTCAAAAGAAACCTCAGTGTGGAGGCAGAAGTAGATTTAC
TCAGTTATTGTGCAAGAGAGTGGAAGGGAGAAGCCCCGCGTGCCAGACTGATGCGGAAGGCCTATGAGGA
ATTGTTCTGGAGGCACCATATTAAATGTGTTCGAGCAGTCAAGAGAGATAACTACGATGCTCTCAGATCT
GTGTTGTTCCAGATCTTCAGCCAAGGCCTCTCCTTCCCATCATGGATGAAGGAAAAAGACATCGTTAAGC
TTCCTGAAAAACTACTCTTTTCTCAAGGCTGTAACTGGATCCAGCAGTACAGTTTCGGGCCTGAGAAGTA
CACAGGTTCCAATGTGTTTGGAAAGTTACGGAAATGTGTGGAGTTACTGAAACTGCAGTGGACTGAGTTT
AGTGGGATGAGAGATCACCACAAGAGAGGGAGCATGTGTAACAGCCTCTTCTCCGACGCCATCCTGGAGT
GTAAACTGTACGAAGCTTTGAAGTTCCTCATGCTCTACCAGGTCACGGAAGCGTATGAGCAAATGAAGAC
CAACAAGGTTATCCCCAGCCTTTTCAGACTCCTGTTTTCCCGGGAGTCATCGCCGGATCCTTTGAGCTTC
ATGATGAATCACCTGAATTCCATAGGCGACACTTGTGGTTTGGATCAGTTTTCTCCTGACTTCTTGCTAG
TCATGGTCCTGCCCTGCTTCCACACCGTGGGTACTTGTCCCTAA

Translation (317 aa):
MEAPRSAPRERERARTTSGSDQVHSWILVTSQVLSAAWRIARAFVMTTLSPLSATFSYFRSLYLYLGHQL
KWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGEAPRARLMRKAYEELFWRHHIKCVRAVKRDNYDALRS
VLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKLQWTEF
SGMRDHHKRGSMCNSLFSDAILECKLYEALKFLMLYQVTEAYEQMKTNKVIPSLFRLLFSRESSPDPLSF
MMNHLNSIGDTCGLDQFSPDFLLVMVLPCFHTVGTCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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