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Report for CCDS37154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37154.1 Public Mus musculus 15 Snu13 23 108 98 CCDS HistoryNCBI Gene:20826Re-query CCDS DB by CCDS ID:37154.1Re-query CCDS DB by GeneID:20826See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080622.8 ENSMUSP00000091840.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080622.8Link to Ensembl Protein Viewer:ENSMUSP00000091840.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080622Re-query CCDS DB by Protein ID:ENSMUSP00000091840
Original member Current member NCBI NM_011482.4 NP_035612.2 Accepted alive Link to Nucleotide Sequence:NM_011482.4Link to Protein Sequence:NP_035612.2Re-query CCDS DB by Nucleotide ID:NM_011482Re-query CCDS DB by Protein ID:NP_035612Link to BLAST:NP_035612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035612.2 128 Q9D0T1 128 100% 0 0

Chromosomal Locations for CCDS 37154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82042106 82042368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82043897 82044017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82047487 82047489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGACAGAGGCTGATGTGAATCCGAAGGCCTATCCCCTCGCAGATGCCCACCTCACCAAGAAGCTGCTGG
ACCTTGTTCAACAGTCATGTAACTACAAGCAGCTTCGGAAAGGAGCCAATGAAGCCACCAAAACCCTCAA
CAGAGGCATCTCTGAGTTCATTGTGATGGCAGCAGACGCTGAGCCCTTGGAGATCATCCTGCACCTCCCT
CTGCTGTGCGAAGACAAGAATGTCCCCTACGTATTTGTGCGCTCCAAGCAGGCTTTAGGACGGGCGTGTG
GCGTCTCCAGGCCAGTCATCGCCTGTTCTGTTACCATCAAAGAAGGCTCTCAACTAAAGCAGCAGATCCA
GTCCATTCAGCAGTCTATTGAAAGGCTCTTGGTGTAG

Translation (128 aa):
MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP
LLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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