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Report for CCDS28006.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28006.2 Public Mus musculus 16 Lrrc74b 23 108 98 CCDS HistoryNCBI Gene:74685Re-query CCDS DB by CCDS ID:28006.2Re-query CCDS DB by GeneID:74685See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 28006.1
The coding region has been updated to represent an alternative splicing pattern, resulting in a longer C-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28006.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100123.9 ENSMUSP00000097699.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100123.9Link to Ensembl Protein Viewer:ENSMUSP00000097699.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100123Re-query CCDS DB by Protein ID:ENSMUSP00000097699
Original member Current member NCBI NM_029053.3 NP_083329.2 Accepted alive Link to Nucleotide Sequence:NM_029053.3Link to Protein Sequence:NP_083329.2Re-query CCDS DB by Nucleotide ID:NM_029053Re-query CCDS DB by Protein ID:NP_083329Link to BLAST:NP_083329.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083329.2 391 Q14BP6-1 391 100% 0 0

Chromosomal Locations for CCDS 28006.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17545484 17545642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17548691 17548786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17549778 17549856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17552124 17552239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17553106 17553215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17558169 17558375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17559246 17559378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17559737 17559879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17561079 17561211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGAAGGGTCCCTGCGAAGTTCAGAAGAATGAAGATCAAGAGGGAGAAGCTGCGGCCACTGGGCCTCAGG
CAGAGACCCTGGAGGCCGAAAGGTCCTGGACTGCAGATTCACACTCTGCTCTGGAAGCAGAAGGCACCCA
TGGGCTTGGAGAACGGGTCATGGCTACCCTCTATCTGAAGTCTTGCCGGGCCAATAGTGTTGTGCCAGTT
TCTTGTCTTCTGCGCCAAGAGGGTGCCTCTGAATTGAACCTTCGGCACCGTGGCCTGGGGCCCCAGGGGG
TCCGGGCATTGGCTTCCGTATTGACCTCTAATCCCTACATCAAGCGTCTGGATCTTCGGGACAATGGGCT
CTGTGGTGCTGGAGCAGAGGCTCTGGCTGATGTCCTGCGTAAGAACAGCATTATCTCTGATGTGGACCTG
TCAGAGAATCAGATTGGAGCTGCAGGGCTCCAGGCGATCTGCACTGCCCTTGCCTTAAACCCAACTGTTG
AGAAGATGCAGCTGCAAGGGAACAGGCTGGAGGAACAAGCAGCCCAGCACCTCGCTGCTCTTCTGCTGCA
TCACAGGGGCCTGAAATCTCTAGACCTCAGCTATAATCAGCTCAATGACCTGGCAGGAGAGATACTTGGA
CCTGCTGTGGCAGAAAACACAGGACTCACAGAGCTTAACCTCAGTTGGAATCACCTGCGAGGTCTGGGAG
CCACCGCGTTTGCCCGAGGCCTGGAGGCAAATATATTCTTGAAAGTCCTAGACATCTCTCATAATGGCTT
TGGAGACTCTGGTGCCAGTGCGATTGGTGATGCCCTCAGGGTCAACAATGTTTTAGAAGAACTGAATATG
AGGAACAACCGAATCTCCGTGTCAGGAGCCCTGAAGTTGGGATTGGGTCTGCAAGTCAATCAGACGCTGC
GGATTCTTATTATTTCCAAGAATCCTATTCGCAGTGACGGCTGTGTTGGCCTCCTTAAGTCTGTCCGGAA
CAACAAATCATCTGCCCTAGAACTGCTGGATGTGTCTGATATCCAAGTAAGCAGAGAATGTGAGGACCTC
GCTAGCTCCATGAGTGAAATTCTTCCAGGACTCTGTATAAAGCGTTATACTTCTAGAAGAAAAGACTGGC
CACAAGCCTCTACACCATCCCAGCCAGCATCTGCACCAAGTGACTCTGGTCTCTAA

Translation (391 aa):
MKGPCEVQKNEDQEGEAAATGPQAETLEAERSWTADSHSALEAEGTHGLGERVMATLYLKSCRANSVVPV
SCLLRQEGASELNLRHRGLGPQGVRALASVLTSNPYIKRLDLRDNGLCGAGAEALADVLRKNSIISDVDL
SENQIGAAGLQAICTALALNPTVEKMQLQGNRLEEQAAQHLAALLLHHRGLKSLDLSYNQLNDLAGEILG
PAVAENTGLTELNLSWNHLRGLGATAFARGLEANIFLKVLDISHNGFGDSGASAIGDALRVNNVLEELNM
RNNRISVSGALKLGLGLQVNQTLRILIISKNPIRSDGCVGLLKSVRNNKSSALELLDVSDIQVSRECEDL
ASSMSEILPGLCIKRYTSRRKDWPQASTPSQPASAPSDSGL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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