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Report for CCDS49930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49930.1 Public Mus musculus 17 Tmem242 23 108 98 CCDS HistoryNCBI Gene:70544Re-query CCDS DB by CCDS ID:49930.1Re-query CCDS DB by GeneID:70544See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005053.13 ENSMUSP00000005053.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005053.13Link to Ensembl Protein Viewer:ENSMUSP00000005053.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000005053Re-query CCDS DB by Protein ID:ENSMUSP00000005053
Original member Current member NCBI NM_027457.4 NP_081733.3 Accepted alive Link to Nucleotide Sequence:NM_027457.4Link to Protein Sequence:NP_081733.3Re-query CCDS DB by Nucleotide ID:NM_027457Re-query CCDS DB by Protein ID:NP_081733Link to BLAST:NP_081733.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081733.3 140 Q8VCR3-1 140 100% 0 0

Chromosomal Locations for CCDS 49930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5411369 5411467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5433442 5433579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5439532 5439632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5440133 5440217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGAGACCTCGGGTCCTGGGCCCGGGGAGTCCTCTGAATTAGAAGCTCCAGGGTCTCCGGACGATCGGT
TGTTTCTGGTTAAAGGTGGAATTTTCCTTGGTTCTGCAGCCGCAGCGGGAATGCTAGCTGGATTTGTTAC
AACATTATCATTAGCTAAAAAGAAAAGCCCTGAGTGGTTCAATAAGGGCACTATGGCCACGGCTGCCTTA
CCAGAGAGTGGGTCTTCCCTTGCCCTGCGAGCCCTGGGCTGGGGTTCTCTTTATGCCTGGTGTGGAGTTG
GTGTGATCAGCTTTGCAGTGTGGAAAGCCTTAGGAGTTCACAGCATGAAGGACTTTCGAAGTAAGATGCA
ATCCATATTCCCACCAATTCCCAAGAACCATGAGTCAGCCGAGGAGTGGGAGGAAGTCCTGAAGTGGAAA
TGA

Translation (140 aa):
METSGPGPGESSELEAPGSPDDRLFLVKGGIFLGSAAAAGMLAGFVTTLSLAKKKSPEWFNKGTMATAAL
PESGSSLALRALGWGSLYAWCGVGVISFAVWKALGVHSMKDFRSKMQSIFPPIPKNHESAEEWEEVLKWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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