NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29483.1 Public Mus musculus 19 Tigd3 23 108 98 CCDS HistoryNCBI Gene:332359Re-query CCDS DB by CCDS ID:29483.1Re-query CCDS DB by GeneID:332359See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055911.5 ENSMUSP00000059302.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055911.5Link to Ensembl Protein Viewer:ENSMUSP00000059302.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055911Re-query CCDS DB by Protein ID:ENSMUSP00000059302
Original member Current member EBI ENSMUST00000236767.1 ENSMUSP00000157880.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236767.1Link to Ensembl Protein Viewer:ENSMUSP00000157880.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236767Re-query CCDS DB by Protein ID:ENSMUSP00000157880
Original member Current member NCBI NM_001362045.1 NP_001348974.1 Accepted alive Link to Nucleotide Sequence:NM_001362045.1Link to Protein Sequence:NP_001348974.1Re-query CCDS DB by Nucleotide ID:NM_001362045Re-query CCDS DB by Protein ID:NP_001348974Link to BLAST:NP_001348974.1
Original member Current member NCBI NM_198634.2 NP_941036.1 Accepted alive Link to Nucleotide Sequence:NM_198634.2Link to Protein Sequence:NP_941036.1Re-query CCDS DB by Nucleotide ID:NM_198634Re-query CCDS DB by Protein ID:NP_941036Link to BLAST:NP_941036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348974.1 470 Q7TM95 470 100% 0 0
NP_941036.1 470 Q7TM95 470 100% 0 0

Chromosomal Locations for CCDS 29483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5891688 5893100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGAGCTGAACACCAAGAAGAAGCTTCACGCCCTGTCCCTGGCTGAGAAGATCCAGGTGCTGGAACTCT
TGGATGAGTCTAAGATGTCCCAGTCAGAGGTGGCCCGGCGCTTCCAGGTCTCACAGCCCCAGATCTCACG
GATCTGCAAGAATAAGGAGAAGCTGTTGGCAGACTGGTGCAGTGGCACAGCCAACCACGAGCGGAAGCGG
AAGCGTGAATCCAAATACAGTGGGATCGATGAGGCTCTACTGTGCTGGTACCACATTGCCCGAGCCAAGG
CCTGGGATGTAACGGGGCCCATGTTGCTCCACAAGGCCAAGGAACTGGCCGATATCATGGGCCAGGATTT
CGTGCCTAGCATTGGCTGGCTGGTCCGCTGGAAACGTCGAAACAATGTGGGCTTTGGGACTCGCCAGGTC
CTTGTCCCTCTGTTCCCTCCTGAAGCTCCTCCTGCAGTTCTCCCATCTCAGGCCCAGCCACCTCTTTCTC
TTAAAGACTTCTCACCAGAAGATGTTTTTGGCTGTGCTGAAGTACCCTTGTTGTATCGCGCGGTGCCTGG
CAGAGTGTTTGAATGTGATCGGTTGCAAGTACTGTTATGTGCCAACAGCAGAGGCACAGAAAAGCGAAGG
GTATTTGTGGGTGGGCTCCAGGCGGCCCCAAGATGCTTCTTTGGGGTGAGCAGTGAGGCACTGCCTACCT
CTTATCACCCTGACCTAGCCATTCCCTGGTCAGAGTGGCTGGCACAGTTTGACCAGGACATGGGACAGCA
GGGCCGACAGGTAGCCTTGCTACTGGCTTCTGGAGTGGTAGAGGAATGGGCCAGCCTTCCTGGACTCCAT
CACGTTCGACTCCTGCCTCTCTCTGCCTCCAGCACCACTCCTTCCCTGCCTGGCTCTGTGATTTTGGCCT
TTAAGGCCCATTACCGTCACCGTCTACTGAGCAAACTGGCTGCCATGCAGAGTGGGAAAGAGGGCACCTC
CCTGGCGGAGGCCAGGGCTAGCATCACAGTTTTGGATGCTCTGCACATGGTGGCCGCAGCTTGGGCCAAG
GTACCTCGCCAGCTCATTTTGAGCAGCTTTGTTCAAGAAGGGCTCGCTCCGGGCAAAACACCACTGTCCC
TGGACAAAGACACTGAGATGTCACCAGTCCCTAGTGGGCTGAGCCAAGAGGAGTTTTCTCACTTTGTGGA
CCTGGAGGATGAGGACCCAGGGCCTAGAGTGTGCAAAGAGGAGACGGGTACTGAAGACAGTGGGAGGGAA
GAAGATGGCTTTGAGCCCCTGCCCACCAAAGCCGATGCCCTGCAGGCACTGTGCACCCTGAGGAGGTGGC
TTGAATGCAACAGTGCCTCTCCAGAACTCTTTGAGAAATTCTATGACTGTGAGGTGGAGGTGGAGCAGCT
CTGCTGTCTGTGA

Translation (470 aa):
MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANHERKR
KRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGTRQV
LVPLFPPEAPPAVLPSQAQPPLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRR
VFVGGLQAAPRCFFGVSSEALPTSYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLASGVVEEWASLPGLH
HVRLLPLSASSTTPSLPGSVILAFKAHYRHRLLSKLAAMQSGKEGTSLAEARASITVLDALHMVAAAWAK
VPRQLILSSFVQEGLAPGKTPLSLDKDTEMSPVPSGLSQEEFSHFVDLEDEDPGPRVCKEETGTEDSGRE
EDGFEPLPTKADALQALCTLRRWLECNSASPELFEKFYDCEVEVEQLCCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH