NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57133.1 Public Mus musculus 19 Nrxn2 23 108 98 CCDS HistoryNCBI Gene:18190Re-query CCDS DB by CCDS ID:57133.1Re-query CCDS DB by GeneID:18190See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57133.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077182.12 ENSMUSP00000076424.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077182.12Link to Ensembl Protein Viewer:ENSMUSP00000076424.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077182Re-query CCDS DB by Protein ID:ENSMUSP00000076424
Original member Current member EBI ENSMUST00000235714.1 ENSMUSP00000158360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235714.1Link to Ensembl Protein Viewer:ENSMUSP00000158360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235714Re-query CCDS DB by Protein ID:ENSMUSP00000158360
Original member Current member NCBI NM_001205235.2 NP_001192164.1 Accepted alive Link to Nucleotide Sequence:NM_001205235.2Link to Protein Sequence:NP_001192164.1Re-query CCDS DB by Nucleotide ID:NM_001205235Re-query CCDS DB by Protein ID:NP_001192164Link to BLAST:NP_001192164.1

Chromosomal Locations for CCDS 57133.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6428049 6428778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6443631 6443648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6448255 6448284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6450528 6450599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6454979 6455280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6472258 6472419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6473318 6473756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6481110 6481496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6481672 6481875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6488784 6488810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6490067 6490186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6490534 6490915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6491484 6491674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6492836 6493009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6493336 6493455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6504875 6505056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6509778 6509949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6513716 6513805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6516923 6517248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6519249 6519327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6531844 6532148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4512 nt):
ATGGCGCTCGGGAGTCGGTGGCAACCGCCACCCCAGCTGCCGCCGCTGCTGTTGCTGCTGGCGCTGGCGG
CAGGCGTCCGTGGCTTGGAGTTCGGCGGCGGCCCCGGGCAGTGGGCTCGCTACGCGCGTTGGGCGGGAGC
GGCGAGCACCGGCGAGCTCAGCTTCAGCCTGCGCACCAACGCCACGCGCGCGCTGCTGCTCTACCTGGAC
GACGGCGGCGACTGCGACTTCTTGGAGCTGCTGCTGGTGGACGGGCGCCTGCGGCTGCGCTTCACGCTGT
CTTGCGCGGAGCCCGCCACGCTGCAGCTGGACACGCCGGTGGCCGACGACCGCTGGCACATGGTGTTGCT
GACCCGCGACGCGCGGCGCACGGCGCTGGCGGTGGACGGCGAAGCCCGCGCCGCCGAGGTCCGCTCAAAG
CGGCGCGAGATGCAGGTGGCCAGCGACCTGTTCGTGGGCGGCATCCCTCCCGACGTGCGCCTATCTGCAC
TCACGCTCAGCACCGTCAAGTACGAGCCGCCTTTCCGCGGCCTTCTGGCCAACCTGAAGCTGGGCGAGCG
GCCGCCGGCGCTGCTGGGTAGCCAGGGTCTGCGCGGTGCGGCCGCCGACCCTCTGTGTGCGCCTGCGCGC
AATCCCTGCGCCAACGGCGGTCTCTGCACCGTGCTAGCCCCCGGCGAGGTGGGCTGCGACTGCAGCCACA
CTGGATTTGGCGGCAAGTTCTGCAGTGAAGAGGAACACCCCATGGAAGGTCCGGCTCACCTGACGTTAAA
CAGCGAAGTAGGGTCCTTACTGTTCTCCGAGGGGGGGGCCGGGAGAGGAGGAGCCGGCGATGTGCACCAG
CCGACAAAAGGCAAGGAGGAATTTGTGGCAACCTTCAAGGGCAATGAGTTCTTCTGCTACGACCTGTCCC
ACAACCCGATCCAGAGCAGCACTGACGAGATCACACTGGCCTTCCGCACCCTGCAGCGCAACGGGCTGAT
GCTGCACACGGGGAAGTCGGCTGACTACGTCAACCTGTCCCTCAAGTCTGGGGCTGTCTGGCTGGTCATC
AACCTAGGCTCAGGTGCCTTCGAGGCCCTCGTGGAACCCGTCAATGGCAAGTTCAACGACAACGCCTGGC
ACGACGTCCGGGTTACCCGAAACCTGCGCCAGGTGACCATCTCGGTGGACGGGATCCTGACCACCACAGG
CTACACGCAGGAGGATTACACCATGCTGGGCTCTGATGACTTCTTCTACATTGGGGGCAGCCCCAACACA
GCCGACCTGCCTGGCTCACCTGTCAGCAACAACTTCATGGGCTGCCTCAAGGACGTGGTCTACAAGAATA
ATGACTTCAAGCTGGAGCTGTCCCGACTGGCTAAGGAAGGGGACCCGAAGATGAAGCTGCAGGGGGATTT
GTCTTTCCGTTGTGAGGATGTGGCTGCCTTGGACCCTGTGACCTTTGAGAGTCCTGAGGCCTTTGTCGCA
CTGCCCCGCTGGAGCGCCAAGCGCACTGGTTCCATCTCCCTGGACTTCAGAACCACTGAGCCCAATGGGT
TGTTGCTCTTCAGCCAGGGCCGGCGGGCTGGGGCCGGGGTAGGCAGTCACAGTTCTACCCAGAGGGCCGA
CTACTTTGCCATGGAGCTGTTGGATGGCTACCTCTACCTTCTGCTGGACATGGGCTCCGGGGGCATCAAG
CTGCGGGCGTCTAGCCGCAAGGTCAATGATGGTGAATGGTGCCACGTGGACTTCCAGAGGGACGGGCGCA
AAGGCTCCATCTCTGTGAACAGCCGCAGCACGCCATTCTTGGCCACAGGAGAGAGCGAGGTCCTGGACCT
GGAGAGTGAGCTGTACCTGGGCGGTCTCCCCGAGGGGGGACGAGTGGACCTGCCACTGCCCCCTGAGGTG
TGGACAGCTGCTCTCCGGGCTGGCTACGTGGGCTGTGTGAGAGACCTCTTCATCGATGGACGGAGTCGAG
ATCTCCGGGGCCTGGCTGAGGCCCAGGGGGCTGTGGGCGTTGCTCCTTTCTGCTCCCGGGAGACCCTGAA
GCAGTGTGCGTCGGCCCCTTGTCGAAACGGGGGCATCTGTCGAGAGGGCTGGAACCGGTTCGTCTGTGAC
TGCATCGGGACCGGCTTTCTGGGTCGGGTCTGCGAGAGAGAGGCCACGGTCTTAAGCTATGACGGCTCCA
TGTACATGAAGATCATGCTGCCCACTGCGATGCACACGGAAGCAGAGGATGTGTCCTTACGCTTCATGTC
TCAGAGGGCATATGGACTCATGATGGCCACCACCTCCAGGGAGTCGGCTGACACTCTGCGTCTCGAGCTG
GACGGGGGGCAGATGAGGCTCACCGTCAACCTCGACTGCCTGCGCGTCGGCTGCGCACCCAGTAAAGGCC
CCGAGACACTGTTTGCGGGGCACAAGCTGAATGACAATGAATGGCACACGGTGAGGGTGGTCCGGCGTGG
CAAGAGCCTGCAGCTGTCCGTGGACAACGTGACTGTGGAGGGACAGATGGCAGGAGCCCACACTCGGCTG
GAGTTCCACAACATTGAGACGGGCATTATGACAGAGCGGCGGTTTATCTCTGTGGTGCCCTCCAACTTCA
TCGGGCACCTGAGTGGGCTGGTGTTCAATGGTCAACCCTACATGGACCAATGCAAAGATGGAGACATCAC
CTATTGTGAGCTTAATGCCCGCTTTGGCCTGCGTGCCATCGTGGCTGATCCTGTCACGTTCAAGAGTCGC
AGCAGCTACCTGGCGTTAGCCACGCTGCAAGCCTATGCTTCCATGCATCTCTTCTTCCAGTTCAAGACCA
CGGCCCCAGATGGACTTCTGCTGTTCAACTCAGGCAACGGCAACGACTTCATCGTCATCGAGTTGGTCAA
GGGGTACATCCACTACGTGTTTGACCTGGGAAATGGCCCGTCCTTGATGAAGGGAAACTCAGACAAACCA
GTCAATGACAACCAATGGCACAATGTGGTGGTGTCCAGGGACCCAGGCAACGTGCACACACTGAAGATCG
ACTCCCGCACAGTCACGCAGCATTCCAACGGTGCCCGAAATCTGGATCTCAAAGGGGAGTTGTATATCGG
TGGCCTGAGCAAGAATATGTTCAGCAACCTGCCCAAGCTGGTGGCCTCTCGGGATGGCTTTCAAGGCTGC
TTGGCTTCTGTGGACCTCAACGGACGCCTCCCAGACCTCATCGCTGACGCCCTGCACCGCATCGGGCAGG
TGGAGAGGGGCTGTGATGGCCCTAGCACCACCTGCACCGAAGAGTCTTGTGCCAACCAGGGCGTCTGTCT
GCAGCAGTGGGATGGTTTTACCTGTGACTGTACTATGACTTCCTATGGAGGCCCTGTCTGCAATGACCCT
GGGACCACATACATCTTCGGGAAGGGGGGAGCGCTCATCACCTATACATGGCCTCCCAATGACCGGCCCA
GTACACGGATGGACCGCCTGGCCGTAGGCTTCAGCACACACCAGCGGAGCGCTGTGCTGGTGCGAGTGGA
CAGTGCCTCCGGCCTCGGGGACTACTTGCAGCTGCACATTGACCAGGGCACTGTTGGGGTGATTTTTAAT
GTGGGCACGGACGACATTACAATTGATGAGCCCAACGCCATCGTGAGCGACGGCAAATATCACGTGGTGC
GCTTTACTCGAAGTGGTGGCAATGCCACCTTGCAAGTGGACAGCTGGCCAGTCAACGAGAGGTACCCGGC
AGGAAACTTTGATAACGAGCGCCTGGCGATTGCTAGACAGAGAATCCCCTACCGGCTTGGTCGAGTAGTA
GATGAGTGGCTGCTCGACAAAGGACGCCAGCTGACCATCTTCAACAGCCAGGCTGCCATCAAGATAGGGG
GCCGGGATCAGGGCCGCCCCTTCCAGGGCCAGGTGTCCGGCCTCTACTACAATGGGCTCAAGGTACTGGC
GCTGGCCGCCGAGAGCGACCCCAATGTGCGGACCGAAGGCCACCTACGGCTAGTAGGGGAGGGGCCGTCC
GTGCTGCTCAGTGCTGAGACCACTGCCACCACTCTGCTGGCCGACATGGCCACCACCATCATGGAGACCA
CCACCACCATGGCCACCACCACTACTCGCCGGGGCCGTTCCCCCACAATGAGGGACAGCACCACCCAGAA
CACAGATGACCTCCTGGTGGCCTCGGCTGAGTGTCCAAGTGATGATGAGGACCTAGAGGAGTGTGAGCCT
AGTACTGCCAACCCCACGGGTCCGGGGGAGCGCGGCCCGCCAGGTGCAGTGGAGGTGATCCGCGAATCCA
GCAGCACCACGGGCATGGTGGTGGGCATCGTGGCGGCGGCGGCGCTCTGCATCCTCATTCTCCTCTACGC
CATGTACAAGTACCGCAACCGCGACGAGGGCTCCTACCAGGTGGACCAGAGCCGGAATTACATCAGTAAC
TCGGCCCAGAGCAATGGGGCGGTGGTGAAGGAGAAGGCCCCTGCTGCCCCCAAGACGCCAAGCAAGGCCA
AGAAGAACAAAGACAAAGAGTATTACGTCTGA

Translation (1503 aa):
MALGSRWQPPPQLPPLLLLLALAAGVRGLEFGGGPGQWARYARWAGAASTGELSFSLRTNATRALLLYLD
DGGDCDFLELLLVDGRLRLRFTLSCAEPATLQLDTPVADDRWHMVLLTRDARRTALAVDGEARAAEVRSK
RREMQVASDLFVGGIPPDVRLSALTLSTVKYEPPFRGLLANLKLGERPPALLGSQGLRGAAADPLCAPAR
NPCANGGLCTVLAPGEVGCDCSHTGFGGKFCSEEEHPMEGPAHLTLNSEVGSLLFSEGGAGRGGAGDVHQ
PTKGKEEFVATFKGNEFFCYDLSHNPIQSSTDEITLAFRTLQRNGLMLHTGKSADYVNLSLKSGAVWLVI
NLGSGAFEALVEPVNGKFNDNAWHDVRVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYIGGSPNT
ADLPGSPVSNNFMGCLKDVVYKNNDFKLELSRLAKEGDPKMKLQGDLSFRCEDVAALDPVTFESPEAFVA
LPRWSAKRTGSISLDFRTTEPNGLLLFSQGRRAGAGVGSHSSTQRADYFAMELLDGYLYLLLDMGSGGIK
LRASSRKVNDGEWCHVDFQRDGRKGSISVNSRSTPFLATGESEVLDLESELYLGGLPEGGRVDLPLPPEV
WTAALRAGYVGCVRDLFIDGRSRDLRGLAEAQGAVGVAPFCSRETLKQCASAPCRNGGICREGWNRFVCD
CIGTGFLGRVCEREATVLSYDGSMYMKIMLPTAMHTEAEDVSLRFMSQRAYGLMMATTSRESADTLRLEL
DGGQMRLTVNLDCLRVGCAPSKGPETLFAGHKLNDNEWHTVRVVRRGKSLQLSVDNVTVEGQMAGAHTRL
EFHNIETGIMTERRFISVVPSNFIGHLSGLVFNGQPYMDQCKDGDITYCELNARFGLRAIVADPVTFKSR
SSYLALATLQAYASMHLFFQFKTTAPDGLLLFNSGNGNDFIVIELVKGYIHYVFDLGNGPSLMKGNSDKP
VNDNQWHNVVVSRDPGNVHTLKIDSRTVTQHSNGARNLDLKGELYIGGLSKNMFSNLPKLVASRDGFQGC
LASVDLNGRLPDLIADALHRIGQVERGCDGPSTTCTEESCANQGVCLQQWDGFTCDCTMTSYGGPVCNDP
GTTYIFGKGGALITYTWPPNDRPSTRMDRLAVGFSTHQRSAVLVRVDSASGLGDYLQLHIDQGTVGVIFN
VGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATLQVDSWPVNERYPAGNFDNERLAIARQRIPYRLGRVV
DEWLLDKGRQLTIFNSQAAIKIGGRDQGRPFQGQVSGLYYNGLKVLALAAESDPNVRTEGHLRLVGEGPS
VLLSAETTATTLLADMATTIMETTTTMATTTTRRGRSPTMRDSTTQNTDDLLVASAECPSDDEDLEECEP
STANPTGPGERGPPGAVEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDQSRNYISN
SAQSNGAVVKEKAPAAPKTPSKAKKNKDKEYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH