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Report for CCDS57153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57153.1 Public Mus musculus 2 Sfmbt2 23 108 98 CCDS HistoryNCBI Gene:353282Re-query CCDS DB by CCDS ID:57153.1Re-query CCDS DB by GeneID:353282See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114861.7 ENSMUSP00000110511.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114861.7Link to Ensembl Protein Viewer:ENSMUSP00000110511.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114861Re-query CCDS DB by Protein ID:ENSMUSP00000110511
Original member Current member EBI ENSMUST00000114862.7 ENSMUSP00000110512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114862.7Link to Ensembl Protein Viewer:ENSMUSP00000110512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114862Re-query CCDS DB by Protein ID:ENSMUSP00000110512
Original member Current member EBI ENSMUST00000114864.8 ENSMUSP00000110514.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114864.8Link to Ensembl Protein Viewer:ENSMUSP00000110514.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114864Re-query CCDS DB by Protein ID:ENSMUSP00000110514
Original member Current member NCBI NM_001198809.1 NP_001185738.1 Accepted alive Link to Nucleotide Sequence:NM_001198809.1Link to Protein Sequence:NP_001185738.1Re-query CCDS DB by Nucleotide ID:NM_001198809Re-query CCDS DB by Protein ID:NP_001185738Link to BLAST:NP_001185738.1

Chromosomal Locations for CCDS 57153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 10393310 10393406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10401989 10402083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10404438 10404678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 10437947 10438065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGGAGAGATATTTGCCAGTTTCGAAGAAGCGCAACTCATCCTCCTCTTTGGAAAAGATAACCGGCTCAG
CAAATGGGAATGGGACTCTTTACTCAGAGGAAGATACCAACCTGGAGGAAAATGACTTCAGCTGGGGAGA
CTATTTGGAAGAGACAGGTACCAGAGCGGTGCCACACGTGTCCTTCAGACATGTGGAGATCAGCATTCGG
AGTAACTTCCAGCCAGGAATGAAGTTGGAGGTGGCCAACAAGAACAATCCAGACACTTACTGGGTGGCCA
CAATCATCACCACCTGTGGACAGCTGCTGCTCCTGCGTTACTGTGGTTACGGGGAAGACCGAAGGGCTGA
CTTCTGGTGTGACGTGATCATAGCGGATCTGCACCCTGTGGGGTGGTGCACGCAGAACAACAAGGTGTTG
AGGCCTCCGGATGCTATCAAAGACAAGTACTCAGACTGGACAGACTTCCTCATCCGTGAATTGACTGGTT
CTCGGACAGCCCCTGCAAACCTTCTGGAAGGTGTATGTATTGCTATTATTCATCTATTATAG

Translation (183 aa):
MERYLPVSKKRNSSSSLEKITGSANGNGTLYSEEDTNLEENDFSWGDYLEETGTRAVPHVSFRHVEISIR
SNFQPGMKLEVANKNNPDTYWVATIITTCGQLLLLRYCGYGEDRRADFWCDVIIADLHPVGWCTQNNKVL
RPPDAIKDKYSDWTDFLIRELTGSRTAPANLLEGVCIAIIHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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