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Report for CCDS17880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17880.1 Public Mus musculus 3 Gbp2 23 108 98 CCDS HistoryNCBI Gene:14469Re-query CCDS DB by CCDS ID:17880.1Re-query CCDS DB by GeneID:14469See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165774.7 ENSMUSP00000132435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165774.7Link to Ensembl Protein Viewer:ENSMUSP00000132435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165774Re-query CCDS DB by Protein ID:ENSMUSP00000132435
Original member Current member NCBI NM_010260.1 NP_034390.1 Accepted alive Link to Nucleotide Sequence:NM_010260.1Link to Protein Sequence:NP_034390.1Re-query CCDS DB by Nucleotide ID:NM_010260Re-query CCDS DB by Protein ID:NP_034390Link to BLAST:NP_034390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034390.1 589 Q9Z0E6 589 100% 0 0

Chromosomal Locations for CCDS 17880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142623694 142623883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142624575 142624702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142625513 142625622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142629969 142630165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142630516 142630758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142631993 142632273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142633338 142633550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142635222 142635324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142635783 142635976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142637383 142637493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGCCTCAGAGATCCACATGTCGGAACCCATGTGCCTCATTGAGAACACTGAGGCTCAACTAGTGATCA
ACCAGGAGGCTCTGAGGATCCTGTCTGCCATTACACAGCCTGTGGTGGTGGTGGCAATCGTGGGCCTCTA
CCGCACAGGCAAATCCTACCTGATGAACAAGCTAGCTGGGAAGAGGACAGGCTTTTCCCTGGGCTCCACT
GTGCAGTCTCACACCAAGGGCATCTGGATGTGGTGTGTGCCTCACCCCAAGAAGGCAGGGCAAACCCTGG
TTCTGCTTGACACTGAGGGCCTTGAAGATGTTGAGAAGGGTGACAACCAGAATGACTGCTGGATCTTTGC
TTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGAC
CAGCTGCACTATGTGACGGAGCTAACTGATCTTATCAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAG
ACGATTCCGCTAACTTTGTGGGCTTCTTTCCAACCTTTGTGTGGACTCTGAGAGATTTCTCCCTCGAGCT
GGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTCCCTGACCCTGAAAAAAGGAGCT
GATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTTCCAAAGAGGAAGTGCT
TCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTGTG
TGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTG
TGTGGTGGCATCATAGTCAATGGGCCACGTCTAAAGAGCCTGGTGCAGACCTATGTTGGTGCCATCAGCA
ATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCA
AAAGGCCATCACCCACTATGAAGAACAGATGAATCAGAAGATTCAGATGCCCACAGAAACCCTCCAGGAG
CTCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGAAGAATTCTTTCAAGGATG
TAGACCAAAAGTTCCAGACAGAATTAGGGAACCTGCTGGTAGCCAAGCGAGATGCCTTTATCAAGAAGAA
CATGGATGTCTCATCAGCTCGTTGCTCAGACTTGCTGGAGGATATTTTTGGACCCCTGGAAGAAGAAGTA
AAATTAGGGACATTTTCTAAACCAGGAGGTTACTACCTCTTCCTTCAAATGAGACAAGAGCTAGAGAAAA
AGTATAACCAGGCTCCTGGGAAGGGGCTCCAGGCAGAAGCGATGCTGAAAAACTACTTTGATTCCAAGGC
AGATGTTGTTGAAACACTTCTACAGACGGATCAGTCACTCACAGAGGCAGCAAAGGAGGTAGAAGAGGAA
CGTACGAAGGCTGAAGCTGCTGAAGCTGCAAACAGAGAGTTAGAAAAGAAGCAGAAGGAGTTCGAGCTGA
TGATGCAGCAGAAGGAAAAGAGTTACCAGGAGCATGTGAAGAAGCTGACTGAGAAGATGAAAGACGAACA
GAAACAGTTATTAGCAGAACAGGAAAACATCATAGCTGCTAAACTTCGGGAACAGGAAAAATTTCTTAAG
GAAGGATTCGAGAATGAGAGCAAAAAACTTATTCGAGAGATTGATACCCTGAAGCAAAACAAATCGTCTG
GGAAGTGCACTATACTCTGA

Translation (589 aa):
MASEIHMSEPMCLIENTEAQLVINQEALRILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKRTGFSLGST
VQSHTKGIWMWCVPHPKKAGQTLVLLDTEGLEDVEKGDNQNDCWIFALAVLLSSTFIYNSIGTINQQAMD
QLHYVTELTDLIKSKSSPDQSGVDDSANFVGFFPTFVWTLRDFSLELEVNGKPVTSDEYLEHSLTLKKGA
DKKTKSFNEPRLCIRKFFPKRKCFIFDRPAQRKQLSKLETLREEELCGEFVEQVAEFTSYILSYSSVKTL
CGGIIVNGPRLKSLVQTYVGAISNGSLPCMESAVLTLAQIENSAAVQKAITHYEEQMNQKIQMPTETLQE
LLDLHRPIESEAIEVFLKNSFKDVDQKFQTELGNLLVAKRDAFIKKNMDVSSARCSDLLEDIFGPLEEEV
KLGTFSKPGGYYLFLQMRQELEKKYNQAPGKGLQAEAMLKNYFDSKADVVETLLQTDQSLTEAAKEVEEE
RTKAEAAEAANRELEKKQKEFELMMQQKEKSYQEHVKKLTEKMKDEQKQLLAEQENIIAAKLREQEKFLK
EGFENESKKLIREIDTLKQNKSSGKCTIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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