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Report for CCDS18600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18600.1 Public Mus musculus 4 Zmpste24 23 108 98 CCDS HistoryNCBI Gene:230709Re-query CCDS DB by CCDS ID:18600.1Re-query CCDS DB by GeneID:230709See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058754.8 ENSMUSP00000053900.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058754.8Link to Ensembl Protein Viewer:ENSMUSP00000053900.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000058754Re-query CCDS DB by Protein ID:ENSMUSP00000053900
Original member Current member NCBI NM_172700.3 NP_766288.1 Accepted alive Link to Nucleotide Sequence:NM_172700.3Link to Protein Sequence:NP_766288.1Re-query CCDS DB by Nucleotide ID:NM_172700Re-query CCDS DB by Protein ID:NP_766288Link to BLAST:NP_766288.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766288.1 475 Q80W54 475 100% 0 0

Chromosomal Locations for CCDS 18600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121060996 121061220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121065814 121065957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121068710 121068814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121074473 121074657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121081172 121081313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121082821 121082973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121083309 121083425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121087309 121087395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121095552 121095698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121097877 121097999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGGGATGTGGGCATCGGTGGACGCTATGTGGGACTTCCCTGCGGAGAAGCGAATCTTCGGGGCGGTGT
TGCTCTTTTCCTGGACGGTGTATCTTTGGGAGACCTTCCTAGCACAGCGGCAGAGAAGGATATACAAAAC
GACGACTCGCGTACCAGCAGAGTTAGAACAGATCATGGATTCGGACACGTTTGAGAAATCTCGATTGTAT
CAACTGGATAAAAGTACCTTCAGCTTCTGGTCAGGACTCTACTCAGAGGTGGAAGGCACTTTTATTCTTC
TCTTTGGAGGAATCCCTTACCTCTGGAGACTTTCTGGGCAGTTCTGTAGTTCTGCTGGCTTTGGACCAGA
ATACGAGATCATTCAGTCATTGGTGTTCCTGCTGTTGGCCACACTCTTCAGTGCACTGACTGGCTTGCCC
TGGAGTCTGTACAATACTTTTGTAATAGAAGAAAAGCATGGCTTCAATCACCAGACTTTGGAGTTTTTTA
TGAAAGATGCAATCAAAAAATTTATTGTGACTCAATGTATTTTATTGCCTGTGTCTGCCCTTCTGCTTTA
CATTATTAAAATTGGAGGTGACTACTTTTTTATATATGCCTGGCTGTTCACATTAGTTGTTTCTCTGGTT
CTTGTCACCATTTATGCTGACTATATTGCCCCTCTGTTTGACAAATTCACACCTCTACCGGAGGGAAAGC
TTAAGCAGGAAATTGAAGTGATGGCAAAGAGTATTGACTTCCCTTTGACTAAGGTGTATGTTGTTGAAGG
ATCTAAGCGTTCCTCCCACAGCAATGCTTACTTTTATGGCTTCTTCAAGAACAAGAGAATAGTTTTGTTT
GACACTCTACTAGAAGAGTACTCTGTACCAAACAAAGACAACCAGGAGGAGTCTGGCATGGAAGCCCGCA
ATGAAGGTGAAGGGGACAGTGAAGAAGTAAAAGCTAAAGTGAAAAATAAGAAACAAGGTTGTAAAAATGA
GGAGGTACTGGCTGTGCTTGGCCATGAACTGGGACACTGGAAGTTGGGACACACAGTAAAAAATATCATT
ATTAGTCAGATGAATTCTTTCCTGTGTTTTTTCTTGTTTGCTGTATTAATTGGTCGAAGGGAACTTTTTG
CCGCCTTTGGTTTTTATGACAGCCAACCCACTCTGATCGGACTCTTGATCATCTTTCAGTTTATTTTCTC
ACCTTACAATGAGGTTCTGTCTTTCTGCCTAACAGTCCTGAGCCGCAGATTTGAATTTCAAGCTGATGCG
TTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTGATCAAGCTGAACAAAGATAACCTGG
GATTCCCGGTTTCTGACTGGTTGTTTTCAACATGGCACTATTCACACCCTCCGCTTCTAGAGAGGCTTCA
GGCTCTGAAAAATGCAAAACAAGACTGA

Translation (475 aa):
MGMWASVDAMWDFPAEKRIFGAVLLFSWTVYLWETFLAQRQRRIYKTTTRVPAELEQIMDSDTFEKSRLY
QLDKSTFSFWSGLYSEVEGTFILLFGGIPYLWRLSGQFCSSAGFGPEYEIIQSLVFLLLATLFSALTGLP
WSLYNTFVIEEKHGFNHQTLEFFMKDAIKKFIVTQCILLPVSALLLYIIKIGGDYFFIYAWLFTLVVSLV
LVTIYADYIAPLFDKFTPLPEGKLKQEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLF
DTLLEEYSVPNKDNQEESGMEARNEGEGDSEEVKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNII
ISQMNSFLCFFLFAVLIGRRELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADA
FAKKLGKAKDLYSALIKLNKDNLGFPVSDWLFSTWHYSHPPLLERLQALKNAKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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