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Report for CCDS38900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38900.1 Public Mus musculus 4 Ahdc1 23 108 98 CCDS HistoryNCBI Gene:230793Re-query CCDS DB by CCDS ID:38900.1Re-query CCDS DB by GeneID:230793See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044521.13 ENSMUSP00000047113.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044521.13Link to Ensembl Protein Viewer:ENSMUSP00000047113.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044521Re-query CCDS DB by Protein ID:ENSMUSP00000047113
Original member Current member EBI ENSMUST00000105914.1 ENSMUSP00000101534.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105914.1Link to Ensembl Protein Viewer:ENSMUSP00000101534.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105914Re-query CCDS DB by Protein ID:ENSMUSP00000101534
Original member Current member EBI ENSMUST00000105915.7 ENSMUSP00000101535.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105915.7Link to Ensembl Protein Viewer:ENSMUSP00000101535.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105915Re-query CCDS DB by Protein ID:ENSMUSP00000101535
Original member Current member EBI ENSMUST00000105916.7 ENSMUSP00000101536.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105916.7Link to Ensembl Protein Viewer:ENSMUSP00000101536.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105916Re-query CCDS DB by Protein ID:ENSMUSP00000101536
Original member Current member NCBI NM_146155.3 NP_666267.3 Accepted alive Link to Nucleotide Sequence:NM_146155.3Link to Protein Sequence:NP_666267.3Re-query CCDS DB by Nucleotide ID:NM_146155Re-query CCDS DB by Protein ID:NP_666267Link to BLAST:NP_666267.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666267.3 1594 Q6PAL7 1594 100% 0 0

Chromosomal Locations for CCDS 38900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133061450 133066234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4785 nt):
ATGCGTGTGAAGCCCCAGGGCCTGGTGGTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCGAG
AGCCCAAGTACTACCCCGGCGGCCCCCCAACCCCCCGGCCCTTGCTTCCCACCCGGCCCCCTGCCAGCCC
ACCTGACAAGGCCTTTTCCACCCATACCTTCTCTGAGAACCCACGCCCACCCCCTCGGCGGGACCCCAGC
TCCCGCCGTCCACCAGTCCTTGCCAAGGGAGACGACCTGCTACCTCCTCGGGCAGCCCGGCCTGTCTCCC
AGGCCCATTGTCCCTCACCGGCTCCAGACAACAGCTCCCTCCGCCACTGGGACAACGGGCGTGTGAACCT
GCGTCCAGTAGTGCAGCTGATTGACATCATGAAGGACTTGACAAGGCTGTCGCAGGACCTGCAGCACAGC
GGTGTGCATCTGGACTGTGGAGGGCTTCGGCTGAGCCGCCCACCCGCTCCGCCACCCGGCGACTTGCAGT
ACAGCTTCTTCTCTTCGCCCAGCCTGGCCAACAGCATCCGCAGCCCCGAGGAGCGTGCTAACCCTCACAC
CAAGTCAGAGCGGCCCAGCCACCCTCTCTATGAACCTGAGCCCGAGCCCAGGGATAGTCCCCAGCCTGGC
CAAGGCCATGGTCCTGGAGCCGCGGCCACAGCCACTGGTCTGCCCCCCGAGCCCGAGCCAGATGGGCCTG
ATTACTCTGAGCTGGCAGATGCCGACATCCTCAGTGAACTGGCCTCCCTCACTTGCCCTGAGGCCCAGCT
CCTGGAGGCTCAAGCCCTTGAGCCGCCTTCACCACAGCCTGAGCCGCAGCTTCTGGACCCCCAGCCCCGC
TTCCTAGATCCACAGGCACTAGAGCCTCTAGGAGAAGGTTTGGAGCTACCACCCCTGCAGCCCCTTGCTG
ATCCCCTGGGGCTGCCGAGCCTGACCCTGCAGGCCCTAGATACCCTACCTGATTCCTTGGAATCCCAGCT
CCTTGACCCTCAGGCCCTGGACCCCCTGCCCAAGTTGCTGGATGTCCCCGGTCGACGTCTAGAGCCCCAG
CAATCCTTGGGCCACTGCCAACTGGCTGAGCCCTTACGCCTGGACTTGTGCTCACCTCATGGTCCCCCTG
GGCCTGAGGGCCACCCCAAGTACGCCTTGAGGCGCACTGATAGGCCAAAGATCCTGTGTCGCAGGCGGAA
AGCCGGAAGGGGCCGGAAGGCGGACTCAGGACCTGAGGGTCGCCTGCTTCCTCTTCCCATGCCTACAGGG
CTGGCAGCTGCCCTGGCCGAGCCCCCACCGCTGCCACCGCCACCACCTCCTACTCTGTCAGGCCCAGGCC
CAGTTCCCGAGCTGGAGCCAGAGTCTTCTCAAACCCCGATGGTCCCCACCCGCAAAGGCAAGTGCAGGGG
TGTGCGGCGCATGGTGGTGAAGATGGCCAAGATCCCCGTGTCACTGGGGCGGAGGAACAAGACCACGTAC
AAAGTTTCATCCTTGAGCAGCAGTCTGAGTGTGGAGGGCAAGGAGCTGGGCTTGAGGGTGTCGTCAGAGC
CCACCCCACTGCTGAAGATGAAGAACAACGGGCGGAATGTGGTGGTCGTCTTCCCGCCAGGTGAGATGCC
CATCATTCTCAAGCGCAAGCGTGGCCGCCCTCCCAAGAACCTGCTGCTGGGTCCCGGGAAGCCCAAAGAG
CCGACAGTGGTAGCTGCTGAGGCTGCTACTGTGACAGCGGCCACCATGGCCATGCCTGAGGTGAAGAAAC
GCCGGCGACGGAAACAGAAGCTGGCGTCTCCGCAGCCATCGTATGCAGCAGACGCCAATGACAGTAAGGC
TGAATATTCTGATGTCCTCGCCAAGCTGGCCTTTTTGAACCGCCAGAGTCAGTGTGCTGGGAGGTGCTCG
CCACCCCGCTGCTGGACACCCAGTGAGCCTGAGTCCGTGCACCAGGCCCCGGACACTCAGAGCATCTCTC
AGTTCCTGCATCGTGTGCAGGGCTTCCGGAGGCGTGGAGGCAAAACAGGAGGCTTTGGAGGTAGGGGTGG
AGGCCACGCAGCCAAGGCAGCCCGCTGTTCCTTTAGTGACTTTTTTGAGGGCATTGGCAAGAAAAAGAAG
GTGGTAGCAGTGGCAGCTCCTGGGCTTGTGGGTCCTGGTCTCACCGAGTTGGGGCATCCACGCAAAAGGG
GCCGAGGGGAGGTAGATGCTGTAACTGGGAAACCCAAGCGCAAGAGGCGGTCCCGAAAGAATGGGACTCT
GTTCCCAGAGCAGGTGCCCAGTGGCCCAGGCTTTGGGGAGGCAGGTGCTGAGTGGGTCGGAGACAAGGGT
GGTGGCTGGGCCCCTCACCATGGGCACCCAGGAGGGCAAGCTGGCAGAAACTGTGGTTTCCAGGGGACCG
AGGCCAGGGCTTTTGCCTCCACTGGGCTGGAGAGTGGGGCTTCAGGCCGTGGCAGCTACTATGCTGGTGC
GCCCTCAGGCCAGACGGAGCTCAGCCAGGAGCGCCAGAACCTCTTCACTGGCTATTTTCGGTCCCTGCTT
GATTCAGATGACTCCTCTGACCTCTTGGACTTTGCCCTGTCGGCCTCTCGCCCAGAGTCCCGGAAGGCAT
CAGGAACCTATGCAGGGCCTCCCTCCAGTGCACTGCCTGCTCAGCGGGGCCTTGCCACTTTCCCAAGCCG
GGGAGCCAAGGCTAGCCCGGTGGCAGTGGGCAGCAGTGGAGCTGGGGCAGACCCCTCCTTTCAGCCTGTC
CTGCCTTCCCGTCAGACCTTTCCACCAGGGCGGGCAACAAGCTATGGGATAACCCCAGCCACTTCAGACT
GCCGGGCAGCTGAGACCTTCCCAAAGCTGGCTCCCCCACCTTCAGCCGTGGCCCGCTCACCTACAACCCA
TCCGCCCGCCAACACCTACCCACCTCAGTATGGTGGCTATGGGGCCGGGCAAAGCGTGTTTGCCTCGGCA
AAGCCCTTTTCAGGCCAGGACTGTGCAAACAGCAAGGACTGCAGCTTCGCCTATGGCAGCGGCAATAGCC
TCCCTGCCTCACCCAGCAGTGCCCACAGTGCTGGCTACGCCCCGCCACCTACTGGGGGTCCCTGCCTACC
GCCCAGCAAGGCTTCCTTCTTCAACAGCTCTGAGGGGGGCCCCTTCTCTGGGTCAGCTCCCACACCCTTG
CGCTGTGACAGTCGAGCCAGTACCGTCTCACCCGGTGGCTACATGGTGCCCAAGGGCACCACGGCTTCTG
CGGCCTCTGTGGCCTCCTCCTCTTCCTCTTCCTTTCAGCCCTCACCTGAGAACTGTCGGCAGTTTGTGGG
GGCTTCTCAGTGGCCTTTCCGGCAGGGGTATGGAGGCCTGGACTGGGCCTCAGAGGCCTTTAGTCAGCTC
TACAATCCCAATTTTGACTGCCATGGCAGCGAACCCAATGTGATCTTGGACATCTCGAACTACACGCCGC
AGAAGGTAAAGCAGCAGACAGCCGTGTCCGAGACCTTCTCCGAGTCATCCTCTGACAGCACCCAGTTCAG
TCAGCCAGTCGGTGGTGGTGGCTTCAGGCGTGCCAACAGCGAGGCCTCAAGCAGTGAGGGCCAGTCTAGC
CTGTCGAGCCTGGAGAAGCTCATGATGGACTGGAACGAAGCTTCGTCTGCTCCCGGCTACAACTGGAACC
AGAGTGTCCTCTTTCAGAGTAGCTCAAAGCCCGGCCGTGGACGACGGAAGAAGGTGGACCTGTTTGAGGC
CTCCCATCTGGGCTTTTCAACATCCACCTCGGCCACTGCCTCTGGCTACCCGTCCAAACGGAGCACCGGG
CCCCGGCAGCCTCGGGGTGGCCGGGGTAGTGGGGCCTGCTCGGCCAAGAAGGAGAGAGGTGGTACAGCGG
CCAAAGCCAAGTTCATCCCCAAGCCACAACCGGTGAACCCCCTGTTCCAGGACAGCCCAGACCTTGGCCT
GGACTACTACAGTGGAGACAGCAGCATGTCACCACTGCCCTCCCAGTCGAGAGCCTTTGGTGTGGGAGAA
CGCGATCCCTGTGACTTCATGGGACCCTACTCCATGAATCCATCCACACCTTCTGATGGCACTTTTGGCC
AAGGCTTCCACTGTGACTCTCCCAGCCTGGGTGCTGCGGAGCTTGATGGCAAGCATTTCCCACCACTGGC
CCACCCGCCCACAGTGTTCGATGCTGGCCTGCAGAAGGCCTACTCACCCACCTGTTCACCAACGCTAGGC
TTCAAGGAAGAGTTGCGGCCACCACCTTCCAAGCTGACTGCCTGTGAGCCCCTCAAGCATGGTCTTCAGG
GGGCTAGCCTGAGCCATGCTGCCCAAGCCCACCTGAGCTGCCGGGACCTACCGCTGGGCCAGCCTCACTA
TGATTCCCCTAGTTGCAAGGGTACAGCCTACTGGTACCCACCAGGTTCAGCTGCCCGTAGCCCACCCTAT
GAAGGCAAGGTGGGCTCGGGGCTGCTGGCTGACTTCCTGGGCAGGACGGAAGCTGTCTGCCTCAGTGCCC
CTCACCTGGCTAGCCCACCAGCCACGCCCAAGGCCGACAAGGAGCCACTGGAGATGGCCCGGCCCCCGGG
TCCACCCCGTGGCCCTGCTGCAGCCACTGCTGGCTATGGCTGCCCACTCCTTAGTGACTTAACTCTGTCC
CCTGTGCCGAGGGACTCGCTGCTGCCCCTGCAGGACACTGCCTACAGGTATCCAGGCTTTATGCCGCAGG
CACATCCTGGCCTGGGTGGGGGCCCTAAGAGTGGCTTCCTGGGGCCCATGGCAGAACCTCACCCTGAGGA
CACATTTACCGTCACCTCCCTGTAG

Translation (1594 aa):
MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPTPRPLLPTRPPASPPDKAFSTHTFSENPRPPPRRDPS
SRRPPVLAKGDDLLPPRAARPVSQAHCPSPAPDNSSLRHWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHS
GVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERANPHTKSERPSHPLYEPEPEPRDSPQPG
QGHGPGAAATATGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPQPEPQLLDPQPR
FLDPQALEPLGEGLELPPLQPLADPLGLPSLTLQALDTLPDSLESQLLDPQALDPLPKLLDVPGRRLEPQ
QSLGHCQLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADSGPEGRLLPLPMPTG
LAAALAEPPPLPPPPPPTLSGPGPVPELEPESSQTPMVPTRKGKCRGVRRMVVKMAKIPVSLGRRNKTTY
KVSSLSSSLSVEGKELGLRVSSEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKE
PTVVAAEAATVTAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCS
PPRCWTPSEPESVHQAPDTQSISQFLHRVQGFRRRGGKTGGFGGRGGGHAAKAARCSFSDFFEGIGKKKK
VVAVAAPGLVGPGLTELGHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGAEWVGDKG
GGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYAGAPSGQTELSQERQNLFTGYFRSLL
DSDDSSDLLDFALSASRPESRKASGTYAGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPV
LPSRQTFPPGRATSYGITPATSDCRAAETFPKLAPPPSAVARSPTTHPPANTYPPQYGGYGAGQSVFASA
KPFSGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFNSSEGGPFSGSAPTPL
RCDSRASTVSPGGYMVPKGTTASAASVASSSSSSFQPSPENCRQFVGASQWPFRQGYGGLDWASEAFSQL
YNPNFDCHGSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFSQPVGGGGFRRANSEASSSEGQSS
LSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFSTSTSATASGYPSKRSTG
PRQPRGGRGSGACSAKKERGGTAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFGVGE
RDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAAELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLG
FKEELRPPPSKLTACEPLKHGLQGASLSHAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPY
EGKVGSGLLADFLGRTEAVCLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAATAGYGCPLLSDLTLS
PVPRDSLLPLQDTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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