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Report for CCDS20417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20417.1 Public Mus musculus 6 Arpc4 23 108 98 CCDS HistoryNCBI Gene:68089Re-query CCDS DB by CCDS ID:20417.1Re-query CCDS DB by GeneID:68089See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156898.4 ENSMUSP00000114839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156898.4Link to Ensembl Protein Viewer:ENSMUSP00000114839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156898Re-query CCDS DB by Protein ID:ENSMUSP00000114839
Original member Current member NCBI NM_026552.3 NP_080828.1 Accepted alive Link to Nucleotide Sequence:NM_026552.3Link to Protein Sequence:NP_080828.1Re-query CCDS DB by Nucleotide ID:NM_026552Re-query CCDS DB by Protein ID:NP_080828Link to BLAST:NP_080828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080828.1 168 P59999 168 100% 0 0

Chromosomal Locations for CCDS 20417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113378206 113378208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113380726 113380844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113381963 113382074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113384082 113384177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113385490 113385660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113388771 113388776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGACTGCCACTCTCCGCCCCTACCTTAGTGCCGTGCGGGCCACGCTGCAGGCTGCTCTCTGCCTGGAGA
ACTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAGGTCGAAGTCAGGAGTAGCAAAGAACTGCT
ATTACAGCCTGTCACCATCAGCAGGAATGAGAAGGAAAAGGTTCTTATTGAAGGCTCCATCAACTCTGTC
CGGGTCAGCATTGCTGTGAAGCAGGCCGATGAAATTGAGAAGATTTTATGCCATAAATTCATGCGCTTCA
TGATGATGCGAGCAGAGAACTTCTTTATCCTTCGAAGGAAACCTGTGGAGGGATATGACATCAGCTTTCT
CATCACCAACTTCCACACGGAGCAGATGTACAAACACAAGCTGGTGGACTTTGTAATCCACTTCATGGAG
GAGATCGACAAGGAGATCAGTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTATCGTAGCTGAGGAGT
TCCTCAAGAATTTTTAA

Translation (168 aa):
MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSV
RVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFME
EIDKEISEMKLSVNARARIVAEEFLKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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