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Report for CCDS20844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20844.1 Public Mus musculus 7 Kptn 23 108 98 CCDS HistoryNCBI Gene:70394Re-query CCDS DB by CCDS ID:20844.1Re-query CCDS DB by GeneID:70394See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006178.4 ENSMUSP00000006178.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006178.4Link to Ensembl Protein Viewer:ENSMUSP00000006178.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006178Re-query CCDS DB by Protein ID:ENSMUSP00000006178
Original member Current member NCBI NM_133727.2 NP_598488.2 Accepted alive Link to Nucleotide Sequence:NM_133727.2Link to Protein Sequence:NP_598488.2Re-query CCDS DB by Nucleotide ID:NM_133727Re-query CCDS DB by Protein ID:NP_598488Link to BLAST:NP_598488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598488.2 430 Q8VCX6 430 99.7674% 0 1

Chromosomal Locations for CCDS 20844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16119959 16120181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16120490 16120572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16120712 16120796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16120870 16120924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16123035 16123110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16123200 16123273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16123772 16123881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16123955 16124032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16124717 16124792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16125713 16125848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16125937 16126107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16127118 16127243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGGGGAGGCGGCCGTGGCAGAGGGACCTTGTCCACTGCTGGAGGACAGCTTCACGCGCTTCTCGTCGC
AAAGCAACGTGTACGGGCTTGCTGGAGGCGCGGACGGGCGAGGGGAGTTGCTGGCCGCCACTCTTAAAGG
CAAGGTGCTCGGCTTCCGCTATCAAGACCTCCGACAGAAAATCCGGCCTGTGGCTAAAGAGCTGCAATTC
AACTACATTCCCGTGGATGCTGAGATCGTCTCCATCGACACTTTCAACAAGTCACCCCCAAAACGGGGCC
TGGTTGTGGGCATCACTTTTATAAAGGACTCAGGAGACAAGGGCAGTCCGTTTCTTAACATTTACTGTGA
CTATGAGCCTGGCTCAGAGTACAACCTGGACTCTATTGCAGAGAGCTGCCTGAATTTGGAACTCCAGTTC
ACACCTTTCCAGCTGTGCCACGCAGAAGTCCAGGTTGGGGACCAGCTGGAGACGGTGTTTCTGCTGAGTG
GGAACGATCCAGCTATTCATCTCTACAAGGAGAATGAGGGACTACATCAGTTTGAGGAGCAGCCCGTGGA
AAACCTCTTTCCAGAGCTCACGAACCTGACCAGTAGTGTCCTTTGGCTTGATGTCCACAACCTCCCTGGC
TCATCCCAGCGGCTCTCGGCTCTCGGCTGCCAGAGTGGTTATGTGCGTGTGGCTCACGTGGACCAGAAGA
ATCAAGAGATCTTGCAGACATGGACAATCCAGCAGGATGGGCCCATCTCCCGAGTGATTGTGTTCAGCCT
GTCAGCCTCGGAGGCAACACAGGACAGCCCCCAGCAGGAAGGATACAGTCTGCTTGTGGCCAGCATGCTG
GAGCCAGCTGTGGTGTACTGGGATCTTCTGAACAAGGGTCTGGATGACCAACTTCTCCTGCCTGGCAGTG
ACCAGTTTGACAGCGTCCTCTGTGGCCTGGTCACTGACGTGGACCTAGATGGACAACCGGAAGTCCTGGT
GGCCACCTATGGACAGGAGCTGCTCTGCTATAAGTATCGTGGACTGCCAGAGGACAGCAGAGGCTTCCGC
CTGCTGTGGCGCAGGAGCTTCGCCAGCCCCCTGCTGGCCATGGCCCATGTGGACCTGACTGGAGATGGCC
TGCGGGAGCTGGCCGTGATATCCCTGAAAGGGGTGCACATCCTCCAGCACAGCCTGATCCAGGCCTCTGA
ACTGGTCTTGACACGGCTTCGTCATCAAGTGGAGCAGAGGAAACATCAGCAGGGCCTTGGGGACAGAGTT
GGGCCCAGGCCTGTGGAACACCCAGCCTCCTGA

Translation (430 aa):
MGEAAVAEGPCPLLEDSFTRFSSQSNVYGLAGGADGRGELLAATLKGKVLGFRYQDLRQKIRPVAKELQF
NYIPVDAEIVSIDTFNKSPPKRGLVVGITFIKDSGDKGSPFLNIYCDYEPGSEYNLDSIAESCLNLELQF
TPFQLCHAEVQVGDQLETVFLLSGNDPAIHLYKENEGLHQFEEQPVENLFPELTNLTSSVLWLDVHNLPG
SSQRLSALGCQSGYVRVAHVDQKNQEILQTWTIQQDGPISRVIVFSLSASEATQDSPQQEGYSLLVASML
EPAVVYWDLLNKGLDDQLLLPGSDQFDSVLCGLVTDVDLDGQPEVLVATYGQELLCYKYRGLPEDSRGFR
LLWRRSFASPLLAMAHVDLTGDGLRELAVISLKGVHILQHSLIQASELVLTRLRHQVEQRKHQQGLGDRV
GPRPVEHPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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