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Report for CCDS21054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21054.1 Public Mus musculus 7 Nfkbib 23 108 98 CCDS HistoryNCBI Gene:18036Re-query CCDS DB by CCDS ID:21054.1Re-query CCDS DB by GeneID:18036See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032815.10 ENSMUSP00000032815.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032815.10Link to Ensembl Protein Viewer:ENSMUSP00000032815.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032815Re-query CCDS DB by Protein ID:ENSMUSP00000032815
Original member Current member EBI ENSMUST00000085851.11 ENSMUSP00000083012.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085851.11Link to Ensembl Protein Viewer:ENSMUSP00000083012.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085851Re-query CCDS DB by Protein ID:ENSMUSP00000083012
Original member Current member NCBI NM_001306222.1 NP_001293151.1 Accepted alive Link to Nucleotide Sequence:NM_001306222.1Link to Protein Sequence:NP_001293151.1Re-query CCDS DB by Nucleotide ID:NM_001306222Re-query CCDS DB by Protein ID:NP_001293151Link to BLAST:NP_001293151.1
Original member Current member NCBI NM_010908.5 NP_035038.2 Accepted alive Link to Nucleotide Sequence:NM_010908.5Link to Protein Sequence:NP_035038.2Re-query CCDS DB by Nucleotide ID:NM_010908Re-query CCDS DB by Protein ID:NP_035038Link to BLAST:NP_035038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293151.1 359 Q60778 359 100% 0 0
NP_035038.2 359 Q60778 359 100% 0 0

Chromosomal Locations for CCDS 21054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28759103 28759204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28759827 28760096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28760177 28760265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28761602 28761935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28762026 28762131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28766244 28766422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCCGGGGTCGCGTGCTTGGGGAAAACTGCGGATGCCGATGAATGGTGCGACAGCGGCCTGGGCTCTC
TAGGTCCCGACGCAGCGGCTCCCGGAGGACCAGGTCTGGGCGCAGAGCTTGGCCCAGAGCTGTCGTGGGC
GCCCTTAGTCTTTGGCTACGTCACTGAGGATGGGGACACAGCCCTGCACTTGGCTGTGATTCATCAGCAT
GAGCCCTTCCTGGATTTCCTCCTGGGCTTCTCCGCCGGCACCGAGTACCTTGACCTGCAGAATGACCTAG
GCCAAACAGCCCTGCATCTAGCAGCCATCCTTGGGGAGGCATCTACAGTAGAGAAGTTGTATGCAGCCGG
TGCAGGAGTGTTGGTGGCTGAGAGAGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACAC
ACGTGCGCGTGCGTACTGCTCCAGCCCCGTCCCAGCCACCCAAGAGATGCCTCAGATACCTACCTCACTC
AGAGCCAGGACTGTACCCCAGACACCAGCCATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAA
CGAAGAGGAGCCGCGTGATGAAGACTGGAGGCTACAACTAGAAGCTGAAAACTATGATGGCCATACCCCA
CTCCATGTAGCTGTCATCCACAAAGATGCAGAGATGGTCCGGCTGCTCAGGGATGCCGGAGCCGACCTCA
ATAAACCGGAGCCTACGTGTGGCCGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCT
GGAACTTCTCCTGAAAGCCGGTGCTGACCCCACCGCCCGCATGTATGGGGGCCGCACCCCGCTTGGCAGT
GCCCTGCTCCGGCCCAACCCCATCCTTGCCCGCCTCCTCCGTGCACATGGGGCCCCTGAACCTGAGGACG
AGGACGATAAGCTTAGCCCTTGCAGCAGCAGCGGCAGCGACAGTGACAGTGACAACAGAGATGAGGGCGA
TGAATATGATGACATCGTGGTTCACAGTGGCAGGAGCCAAAACCGACAACCGCCTTCCCCGGCATCCAAA
CCTCTTCCTGATGACCCCAACCCTGCCTGA

Translation (359 aa):
MAGVACLGKTADADEWCDSGLGSLGPDAAAPGGPGLGAELGPELSWAPLVFGYVTEDGDTALHLAVIHQH
EPFLDFLLGFSAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAH
TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP
LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS
ALLRPNPILARLLRAHGAPEPEDEDDKLSPCSSSGSDSDSDNRDEGDEYDDIVVHSGRSQNRQPPSPASK
PLPDDPNPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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