CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS21076.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
21076.1 |
Public |
Mus musculus |
7 |
Zfp27 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:22689](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:21076.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:22689](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 21076.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000053521.14 |
ENSMUSP00000054012.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000053521.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000054012.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000053521](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000054012](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000162592.7 |
ENSMUSP00000123953.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000162592.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000123953.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000162592](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000123953](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000161904.7 |
ENSMUSP00000124684.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000161904.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000124684.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000161904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000124684](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000159920.1 |
ENSMUSP00000125232.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000159920.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000125232.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000159920](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000125232](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000172448.1 |
ENSMUSP00000127677.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000172448.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000127677.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000172448](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000127677](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001037707.1 |
NP_001032796.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001037707.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001032796.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001037707](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001032796](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001032796.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285797.1 |
NP_001272726.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285797.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272726.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285797](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272726](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272726.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285798.1 |
NP_001272727.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285798.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272727.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285798](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272727](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272727.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_011754.2 |
NP_035884.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_011754.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_035884.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_011754](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_035884](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_035884.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 21076.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2460 nt): ATGGATGTGACTATAGATTTCAGCAGAGAGGAGTGGCAGCATCTAGATCCTGCTCAAAGGAGTCTCTATC GGGATGTGGTGCAGGAGACCTACAGTCACCTGCGCTCAGTGGAAGAACTACAGCAGATTGGTGACCAGAA AAAGACCTACCAGCAAATAGGACATAAATCAGCGAGTGATATGGTTTTCATCACGAAGACGCTGGGTGCA GAGAGTTGCCATGACTACTCAGGCGTTAGGAAGGTGATTCATGTGAACTCATACATTGTTCTCCCTCCCA AGAGGCCACGTCACTGGGACCCACCTGAGGATGAGCCGAAGCATAGTTCAGATTTACAGACTCATGATGA AAGTAATGGGCTGAAGAGAACTAAAAGGATTACTGAATATGGTAAAATTTCATCCTGTATCAACACTGAA CATATTCTAACAGGAGAGAAATTACCGGACCATAATCAATGTGGAAAAGTCCTCGGTTATAAACAAATAC CTTGTCAATATCAGAAAATTCATACTGGGGAGAAATCATATGAATGTGCTGAATTTGGAAAGATTTTTAC CCAGAAGTCACAGCTCAGAGTACACGTGACGTCTCCTACAGGAGAAAAACTCTACGTGTGCGTCGAATGT GGGAAGGCATGTTCTCAGACGTCAGAGTTCCTCACACATCAAAAAACCCACACCAGGGAGAAGCCCTATA AATGCGGTGACTGTGGAAAGTCCTTTTTCCAAGTATCTTCTCTGTTCAGGCACCGGAGGATCCACACTGG AGAAAAGCTCTACGACTGTAGCCATTGTGGGAAAGGCTTCTCTTACAACTCAGACCTCAGGATACATCAG AAGATCCATACAGGAGAGAAACGCCATGGCTGCGTCGACTGTGGCAAAGCCTTCACACAAAAGTCCACAC TGAGGATGCACCAGAAGATCCACACGGGCGAGAGGGCCTATGTCTGTATTGAGTGTGGACAGGCTTTTAT CCAGAAGACACACCTGGTCGCACACCGAAGAATTCACACTGGAGAGAAGCCATACGCGTGTGACGGCTGT GGCAAAGCCTTCCTTTCCAAGTCCCAACTCCTGGTCCACCAGCGAATTCACTCAAGAGTGAGGCCCTGTG TATCTCTCGACCGTGCGAAACCCTTCAGCAGCGCTCCCAACCTCCTTCCGCGTAAGAAAGTTCAAATGAG AGAGAAATCGTCCATCTGCGCGGAGTGTGGGAAGGCCTTTACCTACAGGTCGGAGCTAATCATTCATCAG AGAACTCACACGGGAGAGAAGCCTTATCAGTGCGGGGACTGTGGCAAAGCCTTCACCCAGAAGTCAGCCC TCACCGTGCACCGAAGAATCCACACGGGGGAGAAGTCGTATGTGTGTGTGAAGTGCGGGCTAGCCTTCGT GCAAAGGGCACACTTGGATGCACACCAGGTGATTCACACTGGAGAAAAACCTTACCAGTGTGGTCATTGT GGGAAATTCTTCACTTCCAAGTCGCAACTCCACGTGCACAAGCGGATTCACACGGGGGAAAAACCCTATG TGTGCAGTAACTGTGGGAAGGCCTTTGCCAACAGGTCAAATCTCATCACACATCAGAAAACTCATACAGG GGAGAAAGCCTATGTCTGTGCAAGGTGTGGGAAAGCATTCACTCAGAGGTCAGACCTGGTTACACACCAG AGGATACATACCGGAGAGAAGCCATATGGGTGTAGCACCTGCGGGAAAGCCTTTACCCAGAAATCACACC TCAGTATACACGAGAAGATTCACACCGGAGAGAGACAGTACGGATGCCGAGACTGTGGGAAAGCCTTCAA CCAGAAATCCATACTCATCGTGCACCAGAAAATCCACACGGGGGAGAAACCGCACGTGTGTGCCGAGTGC GGGCGAGCTTTCATCCGCAAGTCCAACTTCATCACCCATCAGCGCATCCATACTGGCGAGAAACCTTATG GATGCACCGACTGCGGCAAGTCCTTTACCTCCAAGTCGCAGCTCCTGGTGCACCGGCCAATCCACACCGG CGAGAAACCTTACGTGTGTGCCGAGTGTGGGAAAGCCTTTAGCGGCAGGTCAAATCTCAGCAAGCACCAG AAGACTCACACTGGGGAGAAGCCGTACGCGTGTTCAGAGTGTGGGAAGTCCTTCAGGCAGAAGTCAGAGC TGATTACACACCACAGAATCCACACTGGGGAGAAGCCGTACGATTGCGGCGACTGCGGGAAATCCTTCAC TAAGAAATCCCAGCTCCAAGTGCATCAGCGAATTCACACAGGAGAGAAGCCGTACAGATGTGCCGAGTGC GGGAAGGCCTTCACCGATAGGTCCAATTTGAATAAACATCAAACAACACACACCGGAGAGAAACCTTATA AGTGTGTAGTCTGTGGGAAAGGCTTTGTGCAGAAGTCAGTGCTCAGCATTCATGAGAATGTTCACACCTC GGCAGTATGA
Translation (819 aa): MDVTIDFSREEWQHLDPAQRSLYRDVVQETYSHLRSVEELQQIGDQKKTYQQIGHKSASDMVFITKTLGA ESCHDYSGVRKVIHVNSYIVLPPKRPRHWDPPEDEPKHSSDLQTHDESNGLKRTKRITEYGKISSCINTE HILTGEKLPDHNQCGKVLGYKQIPCQYQKIHTGEKSYECAEFGKIFTQKSQLRVHVTSPTGEKLYVCVEC GKACSQTSEFLTHQKTHTREKPYKCGDCGKSFFQVSSLFRHRRIHTGEKLYDCSHCGKGFSYNSDLRIHQ KIHTGEKRHGCVDCGKAFTQKSTLRMHQKIHTGERAYVCIECGQAFIQKTHLVAHRRIHTGEKPYACDGC GKAFLSKSQLLVHQRIHSRVRPCVSLDRAKPFSSAPNLLPRKKVQMREKSSICAECGKAFTYRSELIIHQ RTHTGEKPYQCGDCGKAFTQKSALTVHRRIHTGEKSYVCVKCGLAFVQRAHLDAHQVIHTGEKPYQCGHC GKFFTSKSQLHVHKRIHTGEKPYVCSNCGKAFANRSNLITHQKTHTGEKAYVCARCGKAFTQRSDLVTHQ RIHTGEKPYGCSTCGKAFTQKSHLSIHEKIHTGERQYGCRDCGKAFNQKSILIVHQKIHTGEKPHVCAEC GRAFIRKSNFITHQRIHTGEKPYGCTDCGKSFTSKSQLLVHRPIHTGEKPYVCAECGKAFSGRSNLSKHQ KTHTGEKPYACSECGKSFRQKSELITHHRIHTGEKPYDCGDCGKSFTKKSQLQVHQRIHTGEKPYRCAEC GKAFTDRSNLNKHQTTHTGEKPYKCVVCGKGFVQKSVLSIHENVHTSAV
|