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Report for CCDS52325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52325.1 Public Mus musculus 7 Plekhb1 23 108 98 CCDS HistoryNCBI Gene:27276Re-query CCDS DB by CCDS ID:52325.1Re-query CCDS DB by GeneID:27276See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107045.8 ENSMUSP00000102660.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107045.8Link to Ensembl Protein Viewer:ENSMUSP00000102660.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107045Re-query CCDS DB by Protein ID:ENSMUSP00000102660
Original member Current member EBI ENSMUST00000116287.8 ENSMUSP00000111991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116287.8Link to Ensembl Protein Viewer:ENSMUSP00000111991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116287Re-query CCDS DB by Protein ID:ENSMUSP00000111991
Original member Current member NCBI NM_001163183.1 NP_001156655.1 Accepted alive Link to Nucleotide Sequence:NM_001163183.1Link to Protein Sequence:NP_001156655.1Re-query CCDS DB by Nucleotide ID:NM_001163183Re-query CCDS DB by Protein ID:NP_001156655Link to BLAST:NP_001156655.1
Original member Current member NCBI NM_001163186.1 NP_001156658.1 Accepted alive Link to Nucleotide Sequence:NM_001163186.1Link to Protein Sequence:NP_001156658.1Re-query CCDS DB by Nucleotide ID:NM_001163186Re-query CCDS DB by Protein ID:NP_001156658Link to BLAST:NP_001156658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156655.1 224 Q9QYE9-3 224 100% 0 0
NP_001156658.1 224 Q9QYE9-3 224 100% 0 0

Chromosomal Locations for CCDS 52325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100644933 100645069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100645570 100645669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100649928 100650032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100653654 100653693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100654602 100654704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100655249 100655401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100656735 100656771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCCCTGGTGAGGGGCGGCTGGCTGTGGAGACAGAGCTCCATCCTCCGCCGCTGGAAGCGGAATTGGT
TCGCTCTGTGGTTGGATGGCACACTGGGTTACTACCATGACGAGACGGCACAGGACGAGGAGGACCGAGT
AGTCATCCACTTCAATGTCCGAGACATAAAGGTCGGCCAAGAGTGTCAGGATGTGCAGCCCCCAGAGGGC
AGGAGCCGAGATGGCCTGCTGACAGTGAACCTGCGGGAGGGTTCCCGCCTGCACCTGTGCGCTGAGACCC
GGGATGATGCCATAGCATGGAAGACTGCCCTGATGGAGGCAAATTCCACCCCGGCCCCAGCTGGAGCCAC
CGTCCCACCCAGGAGCCGTCGGGTTTGCCCTAAGGTCAGGTGTACGACCCTCTCATGGAACCCCTGTAAG
GTTGAGAGGCGGATCTGGGTACGCGTCTACAGCCCGTATCAGGACTACTATGAGGTGGTGCCACCCAACG
CACATGAAGCCACATATGTCCGCAGCTACTATGGGCCACCTTATGCAGGTCCTGGTGTGACACACGTGAT
AGTTCGAGAGGACCCCTGCTACAGCTCAGGCGCCCCTTTGGCCATGGGCATGCTTGCTGGGGCTGCCACG
GGTGCTGCTCTTGGTTCACTTATGTGGTCGCCTTGTTGGTTCTGA

Translation (224 aa):
MALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEG
RSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPPRSRRVCPKVRCTTLSWNPCK
VERRIWVRVYSPYQDYYEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAAT
GAALGSLMWSPCWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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