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Report for CCDS52326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52326.1 Public Mus musculus 7 Plekhb1 23 108 98 CCDS HistoryNCBI Gene:27276Re-query CCDS DB by CCDS ID:52326.1Re-query CCDS DB by GeneID:27276See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107047.9 ENSMUSP00000102662.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107047.9Link to Ensembl Protein Viewer:ENSMUSP00000102662.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107047Re-query CCDS DB by Protein ID:ENSMUSP00000102662
Original member Current member NCBI NM_001163182.1 NP_001156654.1 Accepted alive Link to Nucleotide Sequence:NM_001163182.1Link to Protein Sequence:NP_001156654.1Re-query CCDS DB by Nucleotide ID:NM_001163182Re-query CCDS DB by Protein ID:NP_001156654Link to BLAST:NP_001156654.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156654.1 208 Q9QYE9-2 208 100% 0 0

Chromosomal Locations for CCDS 52326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100644933 100645069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100645570 100645669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100653654 100653693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100654602 100654704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100655249 100655401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100656735 100656810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100661919 100661936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGAGCCCGGCAACCCCGGTTCCACCCGACTCCATCCTGGAAAGTCCTTTTGAAGAAATGGCCCTGGTGA
GGGGCGGCTGGCTGTGGAGACAGAGCTCCATCCTCCGCCGCTGGAAGCGGAATTGGTTCGCTCTGTGGTT
GGATGGCACACTGGGTTACTACCATGACGAGACGGCACAGGACGAGGAGGACCGAGTAGTCATCCACTTC
AATGTCCGAGACATAAAGGTCGGCCAAGAGTGTCAGGATGTGCAGCCCCCAGAGGGCAGGAGCCGAGATG
GCCTGCTGACAGTGAACCTGCGGGAGGGTTCCCGCCTGCACCTGTGCGCTGAGACCCGGGATGATGCCAT
AGCATGGAAGACTGCCCTGATGGAGGCAAATTCCACCCCGGTACGCGTCTACAGCCCGTATCAGGACTAC
TATGAGGTGGTGCCACCCAACGCACATGAAGCCACATATGTCCGCAGCTACTATGGGCCACCTTATGCAG
GTCCTGGTGTGACACACGTGATAGTTCGAGAGGACCCCTGCTACAGCTCAGGCGCCCCTTTGGCCATGGG
CATGCTTGCTGGGGCTGCCACGGGTGCTGCTCTTGGTTCACTTATGTGGTCGCCTTGTTGGTTCTGA

Translation (208 aa):
MSPATPVPPDSILESPFEEMALVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHF
NVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPVRVYSPYQDY
YEVVPPNAHEATYVRSYYGPPYAGPGVTHVIVREDPCYSSGAPLAMGMLAGAATGAALGSLMWSPCWF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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