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Report for CCDS23409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23409.1 Public Mus musculus 9 Paqr9 23 108 98 CCDS HistoryNCBI Gene:75552Re-query CCDS DB by CCDS ID:23409.1Re-query CCDS DB by GeneID:75552See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079597.6 ENSMUSP00000078547.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079597.6Link to Ensembl Protein Viewer:ENSMUSP00000078547.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079597Re-query CCDS DB by Protein ID:ENSMUSP00000078547
Original member NCBI NM_198414.2 NP_940806.2 Updated not alive Link to Nucleotide Sequence:NM_198414.2Link to Protein Sequence:NP_940806.2Re-query CCDS DB by Nucleotide ID:NM_198414Re-query CCDS DB by Protein ID:NP_940806
Current member NCBI NM_198414.3 NP_940806.2 Accepted alive Link to Nucleotide Sequence:NM_198414.3Link to Protein Sequence:NP_940806.2Re-query CCDS DB by Nucleotide ID:NM_198414Re-query CCDS DB by Protein ID:NP_940806Link to BLAST:NP_940806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940806.2 375 Q6TCG2 375 100% 0 0

Chromosomal Locations for CCDS 23409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95559959 95561086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGCCGCGGCGCCTGCAGCAGCGGGGCGCCGGCGTGAAGGGACCGCCGGCCTCGACCTCCCGGCGCTCGC
ATCCCGCCTCCGCCTCCGCCCCCCGGAGCCCGCCGGCGGCCACGACCAAGCCGCTGCTGCGCTGGGACGA
GGTGCCCGATGACTTCGTGGAGTGCTTCATCCTGTCCGGCTACCGGCGGCTGCCGTGCACCGCGCAAGAG
TGCCTGGCCTCGGTGCTGAAGCCCACCAATGAGACGCTCAACTTCTGGACGCACTTCATCCCGCTGCTGC
TGTTCCTCAGTAAGTTCTGCCGCCTCTTCTTCCTGGGCGGCAGCGATGTGCCCTTCCACCACCCCTGGCT
GCTGCCGCTGTGGTGCTATGCGTCGGGGGTGCTGCTGACCTTCGCCATGAGCTGCACGGCGCACGTGTTC
AGCTGCCTGTCGCTGCGCCTGCGCGCCGCCTTCTTCTACCTGGACTACGCTTCCATCAGCTACTATGGCT
TCGGCAGCACCGTGGCCTACTACTACTACCTGCTGCCCAGCCTGAGCCTGCTGGACGCCAGGGTCATGAC
GCCGTATGTGCAGCAGCGCCTGGGCTGGCACGTGGACTGCACCCGCCTCATCGCGGTCTACCGCGCGCTC
GTGCTGCCCGTGGCCTTCGTGCTGGCTGTGGCCTGCACCGTGGCTTGCTGTAAGAGCCGCACCGACTGGT
GCTCCTACCCGTTCGCCCTGCGCACCTTCGTCTTCGTCATGCCGCTCAGCATGGCCTGCCCCATTATGCT
AGAGAGCTGGCTCTTCGACCTGCGAGGCGAGAACCCCACACTCTTCGTGCACTTCTACCGCCGCTACTTC
TGGCTGGTGGTGGCCGCCTTCTTCAACGTGAGCAAGATCCCTGAGCGCATCCAGCCGGGTCTCTTCGACA
TCATTGGCCACAGCCATCAGCTCTTCCACATCTTCACTTTCCTCAGCATCTATGACCAGGTGTACTACGT
GGAAGAGGGCCTGCGCCAGTTCCTCCAGGCACCCCCTGCCGCGCCCACCTTCTCGGGCACAGTGGGCTAC
ATGCTGCTGCTGGTGGTTTGCCTGGGACTAGTCATCAGGAAGTTCCTGAACAGCACCGAATTCTGCAGTA
AAAAGTGA

Translation (375 aa):
MPRRLQQRGAGVKGPPASTSRRSHPASASAPRSPPAATTKPLLRWDEVPDDFVECFILSGYRRLPCTAQE
CLASVLKPTNETLNFWTHFIPLLLFLSKFCRLFFLGGSDVPFHHPWLLPLWCYASGVLLTFAMSCTAHVF
SCLSLRLRAAFFYLDYASISYYGFGSTVAYYYYLLPSLSLLDARVMTPYVQQRLGWHVDCTRLIAVYRAL
VLPVAFVLAVACTVACCKSRTDWCSYPFALRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRRYF
WLVVAAFFNVSKIPERIQPGLFDIIGHSHQLFHIFTFLSIYDQVYYVEEGLRQFLQAPPAAPTFSGTVGY
MLLLVVCLGLVIRKFLNSTEFCSKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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