NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30160.1 Public Mus musculus X Mcf2 23 108 98 CCDS HistoryNCBI Gene:109904Re-query CCDS DB by CCDS ID:30160.1Re-query CCDS DB by GeneID:109904See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101531.9 ENSMUSP00000099070.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101531.9Link to Ensembl Protein Viewer:ENSMUSP00000099070.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101531Re-query CCDS DB by Protein ID:ENSMUSP00000099070
Original member Current member NCBI NM_133197.5 NP_573460.2 Accepted alive Link to Nucleotide Sequence:NM_133197.5Link to Protein Sequence:NP_573460.2Re-query CCDS DB by Nucleotide ID:NM_133197Re-query CCDS DB by Protein ID:NP_573460Link to BLAST:NP_573460.2

Chromosomal Locations for CCDS 30160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 60056664 60056690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60059847 60059953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60062080 60062222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60063094 60063157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60064597 60064675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60067155 60067247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60077181 60077402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60082859 60082984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60084401 60084493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60107456 60107548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109417 60109486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60109756 60109871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60110568 60110634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60113379 60113458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60115103 60115146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60120940 60121111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60123116 60123307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60124709 60124900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60127016 60127135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60129297 60129411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60130044 60130177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60133608 60133757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60135379 60135495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60136254 60136373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60147474 60147524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGGCAGAAGCAAATCCCCCGAGAGGCAAGATGAGGTTCAGAAGGAATGCGGCCTCCTTCCCTGGGAGCT
TACACTTAGTCCTGGTTTTGCGTCCTACCAGTTTTCTTCAACGGACTTTCACGGACATTGGATTTCGATT
TAGCCAGGAGGATTTTATGCTGAAATTACCAGTTGTTATGCTGAGCTCAGTTAGTGATTTGCTGACATAC
ATTGATGACAAGCAGTTAACCCCTGAGTTAGGCGGCACCTTGCAGTACTGCCACAGTGAATGGATCATCT
TCAGAAATGCCATAGAGAAGTTTGCTGTCACAGTGAAAGAAATGGCTCAGATGTTGCAATCCTTTGGAAC
AGAATTGGCTGAAACAGAGCTACCACAGGATATCCTTTCAATAGAAGAGATTCTGGCAGGTCGAGCCGAA
AGGTATCACCTGTTGAAGAATGACTTAACTGCTGTAACCAAAGAAGGAAAAGTTCTGCTCATGAACCTGC
AAGTGCCTGCCACTGAAGAAACTGTCAGTTCAAGCCTTGAATGTACTCAGCACATAAATGGCGACTGGCA
AACTATTAAAAAGTTGCTGGCTCAGGTGCATGATATGGAAACTGCTTTTGATGGATTTTGGGAAAAACAT
CAGCTGAAAATGGAGCAGTATCTGCAACTGTGGAAGTTTGAACAAGACTTTCAAGAGGCTGTGACTCAAG
TTGAATTTTTATTAAGTCAACAAAGAGAACTGGGTGATATAACAGGGAACTTAGCTCAAGTAAAACAAAG
ACTTAAAAAACTAGAGATCTTAGATGATAAATCTCAGGAACTGTTAACCAAGGCCCGGATTGTGATACTA
CGTGGCCACAAGCTGGCATCGAATCACCACTATGCACTTGATTTAATTTGCCAGCGATGCAATGAACTAC
GCTACCTTTCTGATATTTTAGTTAATGAGATCAGAACAAAGCGGGTCCAACTGAGCAGGACTTTCAAAGT
GCATAGACTCTTACAGCAGGCACGTCAGTGCTGTGATCAAGGGGAATGCCTCCTGGCTAGCCAAGGAATG
GATAAGTTTCAGACTAAAGAAGATGCTCAGAAAGCCCTTCAGGATGTGGACAATTTCCTTCAAATGGCCA
TGCCTTTCATCAATTATGATATCGAAAGCCTGCAATATGAATTTGATGTACTCCTATCTCCTGAACTCAA
GGCTCAAATGCAGAATATACAACTAAAGCTTGAAAATATTCGAAGTGCATTTCAGAACCAACAGGCTGGT
TGTAAGAGCCTAAAAGAAGTACCCGAGGGGGCGTTCCAGAACTTGGTTCCTGCATCTGAAAATGTGATGC
GGTCCAGAATGATATTCTTTTCACCGAAACATGTGAAAAAGTCTTGGAGACAGATTCACGCTCAGAGCAA
TGTGAAAGTTGAAGCCGTTGAGGATAGCCAAGAGAAGAATTCTGATCAGTCTCCCAAATTGGACAATAGC
TTGGATATTTTAAAGAACCATGTCCTAAATGAGCTGATACAGACAGAGAGAGCATATGTTCGAGAGCTGT
TTACTGTTTTGTTGGGCTACAGATCTGAGATGGACAATCCACAGATGTTTGATCTTATGCCACCTCTCCT
GAGAAATAAAAAGGATGTTCTCTTTGGAAATATGGCAGAAATATACGAATTCCATAACAACATTTTCATG
AGCAGACTGGAAGATTGCTCTGATGCTCCAGAAAGAGTGGGACCTTGCTTCCTGGAAAGGAAGGATGATT
TTCAGATGTATGCCAAATATTGTCAGAATAAACCCAGGTCAGAGTTAATTTGGAGGAAGTATTCTGAATG
TGCCTTTTTCCAGGAATGTCAACGAAAATTGAAACATCGACTTGGTCTGGATTCCTATTTGCTCAAACCT
GTTCAACGAATCACTAAGTATCAGTTGCTTTTAAAGGAGCTTTTAAAGTATAGCAAAGAAGGTGAAGGAA
CTACTAAATTAAAGGAGGCACTTGACTCAATGCTGGAGCTGCTGAAGTCAGTGAATGACTCCATGCATCA
GACTGCCATCAATGGCTATGTTGGAAATATAAATGAGCTGGGCAAGATGGTTCTTCAAGGTTCCTTCAAT
GTTTGGCTAGGACACCGGAAAGGTGCTACAAAAATGAAGGATTTTGCACGTTTCAAACCCATGCAGAGAC
ATCTTTTCTTATATGAAAAAGCTGTTATGTTTTGTAAGAGGCGTTTCGAATCTGGAGAAGGTGCTGATAG
ATACCCATCATACAGTTTTAAGCACTGCCTAAAAATGGAAGATGTTGGCATCACAGAACATGTGAAAGGT
GATAACCGCAAATTTGAAATACGGTATAGTGAGAAGGAAGAAATTTACATTGTTCAGGCTCCAAATGTTG
ATGTGAAGATGTTATGGCTAAAAGAAATAAGAAAAATTTTGGTGCAGCAGAAGGAACTTATGACTGCTAA
AACCCAGCAGGATCAGGCACTAGACCAGGACCAACTTTTCCCCCAGCAGCAGAATGCCGAGCTATGCAAA
AGCTCACCTTTTTGTGTGTGTGAGGAAACTCTTTTCAACGCCACAGAAGCAGGAGCAGAAGTGGAGCAAG
CTGGTGCCCTGATAAAGGTCAGGGAGGCAGCTGTGCTAGCTCAAGCAGAGGCAAGTTCAGCAGCTTGGAA
TGGGATGTTACCATCTGCAGAAGGCGCTGCTGCAATTGCTGAACATTCATACAATTATTTCTCCTCTAAC
AATGACCATGGAGAAGATAGGACACAAATGAGACACATGTCGGAGGTGACATTCTAG

Translation (928 aa):
MAEANPPRGKMRFRRNAASFPGSLHLVLVLRPTSFLQRTFTDIGFRFSQEDFMLKLPVVMLSSVSDLLTY
IDDKQLTPELGGTLQYCHSEWIIFRNAIEKFAVTVKEMAQMLQSFGTELAETELPQDILSIEEILAGRAE
RYHLLKNDLTAVTKEGKVLLMNLQVPATEETVSSSLECTQHINGDWQTIKKLLAQVHDMETAFDGFWEKH
QLKMEQYLQLWKFEQDFQEAVTQVEFLLSQQRELGDITGNLAQVKQRLKKLEILDDKSQELLTKARIVIL
RGHKLASNHHYALDLICQRCNELRYLSDILVNEIRTKRVQLSRTFKVHRLLQQARQCCDQGECLLASQGM
DKFQTKEDAQKALQDVDNFLQMAMPFINYDIESLQYEFDVLLSPELKAQMQNIQLKLENIRSAFQNQQAG
CKSLKEVPEGAFQNLVPASENVMRSRMIFFSPKHVKKSWRQIHAQSNVKVEAVEDSQEKNSDQSPKLDNS
LDILKNHVLNELIQTERAYVRELFTVLLGYRSEMDNPQMFDLMPPLLRNKKDVLFGNMAEIYEFHNNIFM
SRLEDCSDAPERVGPCFLERKDDFQMYAKYCQNKPRSELIWRKYSECAFFQECQRKLKHRLGLDSYLLKP
VQRITKYQLLLKELLKYSKEGEGTTKLKEALDSMLELLKSVNDSMHQTAINGYVGNINELGKMVLQGSFN
VWLGHRKGATKMKDFARFKPMQRHLFLYEKAVMFCKRRFESGEGADRYPSYSFKHCLKMEDVGITEHVKG
DNRKFEIRYSEKEEIYIVQAPNVDVKMLWLKEIRKILVQQKELMTAKTQQDQALDQDQLFPQQQNAELCK
SSPFCVCEETLFNATEAGAEVEQAGALIKVREAAVLAQAEASSAAWNGMLPSAEGAAAIAEHSYNYFSSN
NDHGEDRTQMRHMSEVTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH