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Report for CCDS76083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76083.1 Public Homo sapiens 1 PERM1 24 110 108 CCDS HistoryNCBI Gene:84808Re-query CCDS DB by CCDS ID:76083.1Re-query CCDS DB by GeneID:84808See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76083.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433179.4 ENSP00000414022.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433179.4Link to Ensembl Protein Viewer:ENSP00000414022.3Re-query CCDS DB by Nucleotide ID:ENST00000433179Re-query CCDS DB by Protein ID:ENSP00000414022
Original member Current member EBI ENST00000694917.1 ENSP00000511592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694917.1Link to Ensembl Protein Viewer:ENSP00000511592.1Re-query CCDS DB by Nucleotide ID:ENST00000694917Re-query CCDS DB by Protein ID:ENSP00000511592
Original member Current member NCBI NM_001291366.2 NP_001278295.1 Accepted alive Link to Nucleotide Sequence:NM_001291366.2Link to Protein Sequence:NP_001278295.1Re-query CCDS DB by Nucleotide ID:NM_001291366Re-query CCDS DB by Protein ID:NP_001278295Link to BLAST:NP_001278295.1
Original member Current member NCBI NM_001369897.1 NP_001356826.1 Accepted alive Link to Nucleotide Sequence:NM_001369897.1Link to Protein Sequence:NP_001356826.1Re-query CCDS DB by Nucleotide ID:NM_001369897Re-query CCDS DB by Protein ID:NP_001356826Link to BLAST:NP_001356826.1
Original member Current member NCBI NM_001394713.1 NP_001381642.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394713.1Link to Protein Sequence:NP_001381642.1Re-query CCDS DB by Nucleotide ID:NM_001394713Re-query CCDS DB by Protein ID:NP_001381642Link to BLAST:NP_001381642.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278295.1 790 Q5SV97-1 790 100% 0 0
NP_001356826.1 790 Q5SV97-1 790 100% 0 0
NP_001381642.1 790 Q5SV97-1 790 100% 0 0

Chromosomal Locations for CCDS 76083.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 976172 976269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 976499 976624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 978881 981029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGGAAAATTTCCAGTACAGCGTCCAGCTGAGTGACCAGGACTGGGCCGAGTTCTCAGCCACCGCCGATG
AGTGTGGCCTCCTGCAGGCCGGCCTGGCCTCTGGGGACGAGCTCTTGTCCAGTGACATTGACCAAGGGGA
CAGCAGTGGCAGCAGTCCCCCCAGGGCCCCACCTCTCCCAACTGGGCAGCTAGCTGCAGGAGGGCGGAGC
CGGCGGGGCTGCGAGGAGGAGGACGTGGCCACACAGCAGCCGGTCAGCAGGTCTCAGGGTGAGCCTGTCT
TGGCCCTGGGGACCGGTCAGCAGACACCCAGCACGTCCGCACGGGCAGAAGCTCCACCGTCCCTCGGCCC
CGGCGCCAGCCCTCCCAGCCAGTTCTCATCCTGCCCTGGTCCGGCGTCTTCTGGAGACCAGATGCAGAGG
CTTCTGCAGGGCCCTGCCCCACGGCCCCCTGGTGAGCCCCCTGGGAGTCCCAAGTCCCCTGGCCACAGCA
CTGGCTCCCAGAGGCCCCCCGATAGCCCTGGAGCCCCACCACGGAGCCCCAGCCGAAAGAAGAGGCGAGC
TGTGGGTGCCAAGGGGGGTGGGCACACAGGAGCCTCTGCTTCTGCCCAGACGGGCTCCCCGCTGCTCCCT
GCGGCCAGTCCTGAGACGGCAAAGCTGATGGCCAAAGCCGGGCAGGAGGAGTTGGGGCCAGGTCCTGCAG
GAGCTCCTGAGCCTGGCCCCAGGTCCCCTGTGCAGGAAGACAGACCAGGGCCAGGTTTGGGCCTGTCTAC
ACCTGTCCCTGTGACAGAGCAAGGCACAGACCAAATCAGAACCCCGCGCCGAGCCAAGCTGCACACAGTG
TCCACGACTGTCTGGGAAGCCCTCCCAGATGTCTCAAGGGCTAAGTCAGACATGGCTGTGTCTACACCTG
CCTCCGAGCCGCAACCTGACAGGGACATGGCTGTGTCTACACCTGCCTCCGAGCCGCAATCTGACAGGGA
CATGGCTGTGTCTACACCTGCCTCTGAGCCGCAACCTGACACGGACATGGCTGTGTCTACACCTGCCTCT
GAGCCGCAACCTGACAGGGACATGGCTGTGTCTATACCTGCCTCCAAGCCGCAATCTGACACGGCTGTGT
CTACACCAGCTTCTGAGCCTCAGTCCAGTGTGGCTCTGTCTACACCCATCTCCAAGCCACAATTGGACAC
GGACGTGGCTGTGTCCACACCTGCCTCCAAACATGGCCTGGATGTGGCCTTGCCTACAGCAGGCCCAGTG
GCTAAGCTAGAGGTGGCTTCATCTCCACCTGTCTCGGAGGCTGTGCCGAGGATGACCGAGTCCAGCGGGC
TTGTGTCTACACCTGTTCCCAGAGCCGACGCCGCTGGCCTCGCCTGGCCTCCCACCCGCAGAGCTGGGCC
TGATGTGGTGGAGATGGAGGCGGTTGTGTCTGAGCCCTCAGCAGGGGCCCCCGGATGCTGCTCTGGGGCA
CCCGCACTGGGTCTCACCCAAGTCCCCAGGAAGAAGAAAGTGCGCTTCTCCGTGGCTGGGCCCAGCCCCA
ATAAGCCAGGCTCAGGACAGGCCTCAGCCCGGCCCTCAGCCCCCCAGACAGCAACTGGGGCCCACGGGGG
GCCCGGAGCCTGGGAGGCTGTGGCTGTCGGGCCCCGGCCCCACCAGCCTCGGATCCTCAAGCACCTGCCT
CGCCCCCCTCCCTCTGCCGTGACGAGGGTCGGGCCCGGGAGCAGCTTTGCCGTGACCCTCCCGGAGGCCT
ACGAGTTCTTCTTCTGTGACACCATCGAGGAGAACGAAGAGGCTGAGGCGGCAGCGGCCGGTCAGGATCC
GGCAGGCGTCCAGTGGCCGGACATGTGCGAGTTCTTCTTCCCAGACGTTGGAGCCCAGAGGTCGAGGCGG
CGGGGGTCCCCGGAGCCGCTCCCGAGAGCTGATCCTGTGCCGGCCCCCATACCTGGAGACCCCGTGCCCA
TCTCCATCCCTGAGGTCTATGAACACTTCTTCTTCGGGGAGGACAGGCTTGAGGGCGTGCTGGGGCCGGC
TGTCCCGCTCCCACTGCAGGCCCTGGAGCCTCCCCGGTCGGCCTCCGAGGGGGCGGGGCCTGGGACCCCC
CTCAAGCCAGCCGTGGTAGAGCGGCTCCACCTGGCTCTTAGACGGGCAGGGGAGCTCCGGGGGCCTGTCC
CATCATTTGCCTTCAGCCAGAATGACATGTGCCTGGTGTTTGTAGCTTTTGCCACCTGGGCTGTGAGGAC
GTCAGATCCGCATACCCCAGACGCCTGGAAAACAGCCTTGCTGGCCAACGTCGGCACCATCTCTGCCATC
CGCTACTTCCGCCGGCAGGTGGGGCAAGGGCGCCGCAGCCACAGCCCCAGCCCCAGCTCCTAG

Translation (790 aa):
MENFQYSVQLSDQDWAEFSATADECGLLQAGLASGDELLSSDIDQGDSSGSSPPRAPPLPTGQLAAGGRS
RRGCEEEDVATQQPVSRSQGEPVLALGTGQQTPSTSARAEAPPSLGPGASPPSQFSSCPGPASSGDQMQR
LLQGPAPRPPGEPPGSPKSPGHSTGSQRPPDSPGAPPRSPSRKKRRAVGAKGGGHTGASASAQTGSPLLP
AASPETAKLMAKAGQEELGPGPAGAPEPGPRSPVQEDRPGPGLGLSTPVPVTEQGTDQIRTPRRAKLHTV
STTVWEALPDVSRAKSDMAVSTPASEPQPDRDMAVSTPASEPQSDRDMAVSTPASEPQPDTDMAVSTPAS
EPQPDRDMAVSIPASKPQSDTAVSTPASEPQSSVALSTPISKPQLDTDVAVSTPASKHGLDVALPTAGPV
AKLEVASSPPVSEAVPRMTESSGLVSTPVPRADAAGLAWPPTRRAGPDVVEMEAVVSEPSAGAPGCCSGA
PALGLTQVPRKKKVRFSVAGPSPNKPGSGQASARPSAPQTATGAHGGPGAWEAVAVGPRPHQPRILKHLP
RPPPSAVTRVGPGSSFAVTLPEAYEFFFCDTIEENEEAEAAAAGQDPAGVQWPDMCEFFFPDVGAQRSRR
RGSPEPLPRADPVPAPIPGDPVPISIPEVYEHFFFGEDRLEGVLGPAVPLPLQALEPPRSASEGAGPGTP
LKPAVVERLHLALRRAGELRGPVPSFAFSQNDMCLVFVAFATWAVRTSDPHTPDAWKTALLANVGTISAI
RYFRRQVGQGRRSHSPSPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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