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Report for CCDS81287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81287.1 Public Homo sapiens 1 CD164L2 24 110 108 CCDS HistoryNCBI Gene:388611Re-query CCDS DB by CCDS ID:81287.1Re-query CCDS DB by GeneID:388611See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374030.3 ENSP00000363142.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374030.3Link to Ensembl Protein Viewer:ENSP00000363142.1Re-query CCDS DB by Nucleotide ID:ENST00000374030Re-query CCDS DB by Protein ID:ENSP00000363142
Original member Current member NCBI NM_001330448.1 NP_001317377.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330448.1Link to Protein Sequence:NP_001317377.1Re-query CCDS DB by Nucleotide ID:NM_001330448Re-query CCDS DB by Protein ID:NP_001317377Link to BLAST:NP_001317377.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317377.1 174 Q6UWJ8-1 174 100% 0 0

Chromosomal Locations for CCDS 81287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27379503 27379509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27380051 27380195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27381780 27381824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27382328 27382399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27382500 27382667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27383152 27383239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGAGGCTCCGGGACCCCGCGCCTTGCGGACTGCGCTCTGTGGCGGCTGTTGCTGCCTCCTCCTATGTG
CCCAGCTGGCTGTGGCTGGTAAAGGAGCTCGAGGCTTTGGGAGGGGAGCCCTGATCCGCCTGAATATCTG
GCCGGCGGTCCAAGGGGCCTGCAAACAGCTGGAGGTCTGTGAGCACTGCGTGGAGGGAGACGGAGCGCGC
AATCTCTCCAGCTGCGTGTGGGAGCAGTGCCGGCCAGAGGAGCCAGGACACTGTGTGGCCCAATCTGAGG
TGGTCAAGGAAGGTTGCTCCATCTACAACCGCTCAGAGGCATGTCCAGCTGCTCACCACCACCCCACCTA
TGAACCGAAGACAGTCACAACAGGGAGCCCCCCAGTCCCTGAGGCCCACAGCCCTGGATTTGACGGGGCC
AGCTTTATCGGAGGTGTCGTGCTGGTGTTGAGCCTACAGGCGGTGGCTTTCTTTGTGCTGCACTTCCTCA
AGGCCAAGGACAGCACCTACCAGACGCTAATCTGA

Translation (174 aa):
MEAPGPRALRTALCGGCCCLLLCAQLAVAGKGARGFGRGALIRLNIWPAVQGACKQLEVCEHCVEGDGAR
NLSSCVWEQCRPEEPGHCVAQSEVVKEGCSIYNRSEACPAAHHHPTYEPKTVTTGSPPVPEAHSPGFDGA
SFIGGVVLVLSLQAVAFFVLHFLKAKDSTYQTLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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