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Report for CCDS90976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90976.1 Public Homo sapiens 1 SRSF11 24 110 108 CCDS HistoryNCBI Gene:9295Re-query CCDS DB by CCDS ID:90976.1Re-query CCDS DB by GeneID:9295See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395136.7 ENSP00000378568.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395136.7Link to Ensembl Protein Viewer:ENSP00000378568.3Re-query CCDS DB by Nucleotide ID:ENST00000395136Re-query CCDS DB by Protein ID:ENSP00000378568
Original member Current member NCBI NM_001350608.2 NP_001337537.1 Accepted alive Link to Nucleotide Sequence:NM_001350608.2Link to Protein Sequence:NP_001337537.1Re-query CCDS DB by Nucleotide ID:NM_001350608Re-query CCDS DB by Protein ID:NP_001337537Link to BLAST:NP_001337537.1
Original member Current member NCBI NM_001394404.1 NP_001381333.1 Accepted alive Link to Nucleotide Sequence:NM_001394404.1Link to Protein Sequence:NP_001381333.1Re-query CCDS DB by Nucleotide ID:NM_001394404Re-query CCDS DB by Protein ID:NP_001381333Link to BLAST:NP_001381333.1

Chromosomal Locations for CCDS 90976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 70221637 70221839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70228422 70228555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70232268 70232377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70234696 70234788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70235501 70235550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70237425 70237552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70239439 70239520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70244684 70244815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70246818 70246907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70249931 70250047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250365 70250503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 70250608 70250805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGAGCAACACTACCGTCGTCCCCAGCACTGCAGGTCCGGGCCCCAGCGGCGGGCCCGGTGGCGGAGGTG
GTGGTGGCGGCGGAGGCGGCGGCACCGAGGTAATCCAGGTGACTAATGTCTCCCCGAGCGCTAGCTCTGA
GCAGATGCGGACTCTCTTCGGTTTCCTAGGCAAGATCGACGAACTGCGCCTCTTCCCGCCGGATGATTCG
CCTTTGCCAGTCTCATCTCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGC
ATCTGACAAACACTGTATTCGTTGACAGAGCTTTGATAGTCGTACCATATGCAGAAGGAGTTATTCCTGA
TGAAGCTAAAGCTTTGTCTCTGTTGGCACCAGCTAATGCAGTGGCAGGTCTTCTGCCTGGTGGTGGACTC
CTGCCTACTCCTAACCCACTTACCCAGATTGGCGCTGTTCCACTGGCTGCTTTGGGGGCTCCTACTCTTG
ATCCTGCCCTTGCTGCACTTGGGCTTCCTGGAGCAAACTTGAACTCTCAGTCTCTTGCTGCAGATCAGTT
GCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAATCATGTAGCTGCTGGTCTCGTTTCACCAAGTCTG
AAATCGGATACCTCTAGTAAAGAAATAGAGGAAGCTATGAAAAGAGTACGAGAAGCACAGTCCCTAATTT
CTGCTGCTATAGAACCAGATAAGAAAGAAGAAAAAAGAAGGCATTCAAGATCAAGATCACGTTCTAGGAG
GAGGAGGACTCCCTCATCTTCTAGACACAGGCGGTCAAGAAGCAGATCGAGACGGCGGTCACATTCTAAG
TCTAGGAGTCGGCGACGATCCAAAAGCCCAAGGCGGAGAAGATCTCATTCCAGAGAAAGAGGTAGAAGGT
CAAGGAGCACATCAAAAACAAGAGACAAAAAGAAAGAAGACAAAGAAAAGAAACGTTCTAAAACACCACC
AAAAAGTTACAGCACAGCCAGACGTTCTAGAAGTGCAAGCAGTTTGCACATTTGTGATTCTAGAGAGAGA
CGACGACGAAGAAGCAGGAGTGGCACAAGATCTCCTAAAAAGCCTCGGTCTCCTAAAAGAAAATTGTCCC
GCTCACCATCCCCTAGGAGACATAAAAAGGAGAAGAAGAAAGATAAAGACAAAGAAAGAAGTAGGGATGA
AAGAGAACGATCAACAAGCAAGAAGAAGAAGAGTAAAGATAAGGAAAAGGACCGGGAAAGAAAATCAGAG
AGTGATAAAGATGTAAAACAGGTTACACGGGATTATGATGAAGAGGAACAGGGGTATGACAGTGAGAAAG
AGAAAAAAGAAGAGAAGAAACCAATAGAAACAGGTTCCCCTAAAACAAAGGAATGTTCTGTGGAAAAGGG
AACTGGTGATTCACTAAGAGAATCCAAAGTGAATGGGGATGATCATCATGAAGAAGACATGGATATGAGT
GACTGA

Translation (491 aa):
MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDS
PLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGL
LPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSL
KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSK
SRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASSLHICDSRER
RRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSE
SDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMS
D


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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