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Report for CCDS72809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72809.1 Public Homo sapiens 1 MIGA1 24 110 108 CCDS HistoryNCBI Gene:374986Re-query CCDS DB by CCDS ID:72809.1Re-query CCDS DB by GeneID:374986See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000443751.3 ENSP00000393675.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443751.3Link to Ensembl Protein Viewer:ENSP00000393675.3Re-query CCDS DB by Nucleotide ID:ENST00000443751Re-query CCDS DB by Protein ID:ENSP00000393675
Original member Current member NCBI NM_001270384.2 NP_001257313.1 Accepted alive Link to Nucleotide Sequence:NM_001270384.2Link to Protein Sequence:NP_001257313.1Re-query CCDS DB by Nucleotide ID:NM_001270384Re-query CCDS DB by Protein ID:NP_001257313Link to BLAST:NP_001257313.1

Chromosomal Locations for CCDS 72809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77779656 77779736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77783238 77783351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77801331 77801508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77803270 77803406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77806975 77807101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77813734 77813867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77815108 77815231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77843307 77843407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77858938 77859056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77859314 77859386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77860040 77860126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77861224 77861322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77863894 77864028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77866338 77866391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77873001 77873120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77874846 77875064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGTCAGACTGCTGCTCAGCGCCAGGCATCAGCTGGGAAGCTGGCGTGGGCAGGCCAGCTGTACCTGGCC
TGGAGCTCCAGATTAGAAGAGGAGCCATGTCAGAAGAAACAGTAAGTGAATCACAGTTTTCCTTGAAGAC
AGCAGCGCTAAGAGTGTTTGATCTTCCTCTGACTTGGTACTATTCTCTCTCCCAGATCAAATTTTCTCCG
GTGGCTAAAAAGTTGTTTGTGGTAACTGCAGTGAGTGCTATATCTGTAATTTTTCTGGCTCATCACTTTA
AAAGAAAACGTGGAAAGAAGAAAGGAAAAATATTACCATGGGAACCAGAGCACCTCATACTTGAATACAC
TAAAAGAGCAGCATCAGACAAAGGTTCAAGTTGTTCCAGTAGCAGACAGAATTTGACATTATCTTTAAGT
TCTACCAAAGACAAAGGATCTCAAGTTTGTAACTATGCTAATGGAGGACTTTTCAGTAAATATTCAGGTT
CTGCACAGAGTTTGGCCTCTGTCCAGAGTGTCAATTCTTGTCATAGCTGCGCTTGTGGCAATTCTAATTC
CTGGGACAAAGCAGATGAAGATGATATTAAACTTGTTAATATTCCTGTGACTACTCCAGAGAACTTATAC
TTAATGGGTATGGAATTGTTTGAAGAGGCATTGCGTCGATGGGAACAAGCTCTGACCTTTCGCAATAGAC
AGGCTGAAGATGAAGCCTGTGGTTCCATTAAACTGGGTGCAGGAGATGCCATTGCTGAAGAAAATGTAGA
TGATATTATTAGTACTGAATTTATCCATAAACTCGAAGCTCTGCTGCAAAGAGCCTATCGTCTCCAAGAG
GAGTTTGAAGCTACCCTTGGGGCATCTGATCCTAATTCCCTTGCTGATGATATTGATAAAGATACAGATA
TCACCATGAAGGGTAATGTGGAAGACTTTGGCCTGCGAGACACCTTGAGCATCGCATCCACGGATTCCTT
TGCTTCCGCAGCAGAGCTTGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGTCCCTTTGTCAC
TGCCCATTTTACGAGGAAGCCATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTACTGAGAACTG
AAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAGGT
AATTCTTTCAGAATCAGCTAACAGGATATTCCTCGCTGAGAGCGGAAGGAAAATTTTATCAGCTTTAATT
GTGAAAGCACGAAAGAATCCAAAGAAGTTTGAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGA
CCGATCACTGGGGTAGTACTGAAATGGAACTTGCTGCTAGAGGGGTGAAAAATCTAAATTTTTATGATGT
TGTTCTGGATTTTATATTAATGGACTCCTTTGAAGATTTGGAAAACCCACCCACATCCATACAGAATGTA
GTAAATAATCGATGGCTAAACTCATCCTTCAAAGAAACAGCTGTGGCTTCAAGTTGTTGGTCGGTGCTGA
AACAGAAAAGACAACAGATGAAGCAGATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACA
CATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTT
AAGAATCAAGTTCTTTTATTTCTCAAAGACATTTTTGACTTTGAGAAGGTGCGCTATTCAAGTACAGAGA
CTTTAGCTGAAGACCTCATGCAGTTACTCATTCGCCGCACTGAGCTTTTAATGGCCTATCTTGAAGCAGA
TGCCCTGAGGCATACAAGTAGTTGTCTAAGCAGTCATGGTCATGTTATGTCCACTGGGCTACTGGAAGCC
AAAGTACAATAA

Translation (633 aa):
MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWYYSLSQIKFSP
VAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRAASDKGSSCSSSRQNLTLSLS
STKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSCACGNSNSWDKADEDDIKLVNIPVTTPENLY
LMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQE
EFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCH
CPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALI
VKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNV
VNNRWLNSSFKETAVASSCWSVLKQKRQQMKQIPDGFFAHFYAICEHISPVLAWGFLGPRNSLYDLCCFF
KNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLMAYLEADALRHTSSCLSSHGHVMSTGLLEA
KVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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