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Report for CCDS30917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30917.1 Public Homo sapiens 1 LY9 24 110 108 CCDS HistoryNCBI Gene:4063Re-query CCDS DB by CCDS ID:30917.1Re-query CCDS DB by GeneID:4063See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368039.2 ENSP00000357018.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368039.2Link to Ensembl Protein Viewer:ENSP00000357018.2Re-query CCDS DB by Nucleotide ID:ENST00000368039Re-query CCDS DB by Protein ID:ENSP00000357018
Original member Current member NCBI NM_001033667.3 NP_001028839.1 Accepted alive Link to Nucleotide Sequence:NM_001033667.3Link to Protein Sequence:NP_001028839.1Re-query CCDS DB by Nucleotide ID:NM_001033667Re-query CCDS DB by Protein ID:NP_001028839Link to BLAST:NP_001028839.1

Chromosomal Locations for CCDS 30917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160796188 160796311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160799753 160800082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160801790 160801917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGTGGCACCAAAGAGTCACACAGATGACTGGGCTCCTGGGCCTTTCTCCAGTAAGCCACAGAGGAGTC
AGCTGCAAATATTCTCTTCTGTTCTACAGACCTCTCTCCTCTTCCTGCTCATGGGACTAAGAGCCTCTGG
AAAGGACTCAGCCCCAACAGTGGTGTCAGGGATCCTAGGGGGTTCCGTGACTCTCCCCCTAAACATCTCA
GTAGACACAGAGATTGAGAACGTCATCTGGATTGGTCCCAAAAATGCTCTTGCTTTCGCACGTCCCAAAG
AAAATGTAACCATTATGGTCAAAAGCTACCTGGGCCGACTAGACATCACCAAGTGGAGTTACTCCCTGTG
CATCAGCAATCTGACTCTGAATGATGCAGGATCCTACAAAGCCCAGATAAACCAAAGGAATTTTGAAGTC
ACCACTGAGGAGGAATTCACCCTGTTCGTCTATGCACCATTTATTGAAAAGTTGTCCGTCCACGTCATCG
AGGGTGACCACCGCACACTCCTGGAGGGCAGCGGCCTGGAGTCCATCATCAGCACCCTGGCTGAGCCACG
TGTGAGCGTGCGGGAGGGCTAG

Translation (193 aa):
MVAPKSHTDDWAPGPFSSKPQRSQLQIFSSVLQTSLLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNIS
VDTEIENVIWIGPKNALAFARPKENVTIMVKSYLGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEV
TTEEEFTLFVYAPFIEKLSVHVIEGDHRTLLEGSGLESIISTLAEPRVSVREG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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