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Report for CCDS1287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1287.1 Public Homo sapiens 1 SCYL3 24 110 108 CCDS HistoryNCBI Gene:57147Re-query CCDS DB by CCDS ID:1287.1Re-query CCDS DB by GeneID:57147See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367770.5 ENSP00000356744.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367770.5Link to Ensembl Protein Viewer:ENSP00000356744.1Re-query CCDS DB by Nucleotide ID:ENST00000367770Re-query CCDS DB by Protein ID:ENSP00000356744
Original member Current member EBI ENST00000367772.8 ENSP00000356746.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367772.8Link to Ensembl Protein Viewer:ENSP00000356746.4Re-query CCDS DB by Nucleotide ID:ENST00000367772Re-query CCDS DB by Protein ID:ENSP00000356746
Original member Current member NCBI NM_181093.4 NP_851607.2 Accepted alive Link to Nucleotide Sequence:NM_181093.4Link to Protein Sequence:NP_851607.2Re-query CCDS DB by Nucleotide ID:NM_181093Re-query CCDS DB by Protein ID:NP_851607Link to BLAST:NP_851607.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851607.2 742 Q8IZE3-1 742 100% 0 0

Chromosomal Locations for CCDS 1287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169853713 169853772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169854270 169854964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169855796 169855957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169859041 169859212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169862613 169862797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169864369 169864508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169866896 169866973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169868928 169869039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169870255 169870357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169873696 169873752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169875978 169876091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169878634 169878819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169888676 169888840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2229 nt):
ATGGGATCAGAGAACAGTGCTTTAAAGAGCTATACACTGAGAGAACCACCATTTACCTTACCCTCTGGAC
TTGCTGTTTATCCCGCTGTACTGCAAGATGGCAAATTTGCTTCAGTTTTTGTGTATAAGAGAGAAAATGA
AGACAAGGTTAATAAAGCTGCCAAGCATTTGAAGACACTTCGTCACCCTTGCTTGCTAAGATTTTTATCT
TGTACTGTGGAAGCGGATGGCATTCATCTTGTCACTGAGCGAGTACAGCCCCTGGAAGTGGCTTTGGAAA
CATTGTCTTCTGCAGAGGTCTGTGCTGGGATCTATGACATATTGCTGGCTCTTATCTTCCTTCATGACAG
AGGACACCTAACACACAATAATGTCTGTTTATCATCTGTGTTTGTGAGTGAAGATGGACACTGGAAGCTA
GGAGGAATGGAAACTGTTTGTAAAGTTTCTCAGGCCACACCAGAGTTTCTGAGGAGTATTCAGTCAATAA
GAGACCCAGCATCTATCCCTCCTGAAGAGATGTCTCCAGAATTCACAACTCTCCCAGAGTGTCATGGACA
TGCCCGGGATGCCTTTTCATTTGGAACATTGGTGGAAAGTTTGCTCACAATCTTAAATGAACAGGTTTCA
GCGGATGTTCTCTCCAGCTTTCAACAGACCTTGCACTCAACTTTGCTGAATCCCATTCCAAAATGTCGGC
CAGCGCTCTGCACCTTACTATCTCATGACTTCTTCAGAAATGATTTTCTGGAAGTTGTGAATTTCTTGAA
AAGTTTAACATTGAAGAGTGAAGAGGAGAAAACGGAATTCTTTAAATTTCTGCTGGACAGAGTCAGCTGC
TTGTCAGAGGAATTGATAGCTTCAAGGTTGGTGCCTCTTCTGCTTAATCAGTTGGTGTTTGCAGAGCCAG
TGGCTGTTAAGAGTTTTCTTCCTTATCTGCTTGGCCCCAAAAAAGATCATGCGCAGGGAGAAACTCCTTG
CTTGCTCTCACCAGCCCTGTTCCAGTCACGGGTGATCCCCGTGCTTCTCCAGTTGTTTGAAGTTCATGAA
GAGCATGTGCGGATGGTGCTGCTGTCTCACATCGAGGCCTACGTGGAGCACTTCACTCAGGAGCAGCTGA
AGAAAGTCATCTTGCCACAGGTTTTGCTGGGCCTGCGTGATACTAGCGATTCCATTGTGGCAATTACTCT
GCATAGCCTAGCAGTGCTGGTCTCTCTGCTTGGACCAGAGGTGGTTGTGGGAGGAGAACGAACCAAGATC
TTCAAACGCACTGCCCCAAGTTTTACTAAAAATACTGACCTTTCTCTAGAAGATTCTCCTATGTGTGTCG
TCTGCAGCCATCACAGTCAGATCTCGCCAATCTTGGAGAACCCCTTCTCTAGCATATTCCCTAAATGTTT
CTTTTCTGGCAGCACGCCCATCAACAGCAAGAAGCACATACAGCGAGATTACTACAATACTCTTTTACAG
ACAGGCGATCCATTTTCTCAGCCTATTAAATTTCCCATAAATGGACTCTCAGATGTAAAAAATACTTCGG
AGGACAGTGAAAACTTCCCATCAAGTTCTAAAAAGTCTGAGGAGTGGCCTGACTGGAGTGAACCTGAGGA
GCCTGAAAATCAAACTGTCAACATACAGATTTGGCCTAGAGAACCTTGTGATGATGTCAAGTCCCAGTGC
ACTACCTTGGATGTGGAAGAGTCATCTTGGGATGACTGCGAGCCCAGCAGCTTAGATACTAAAGTAAACC
CAGGAGGTGGAATCACTGCTACAAAACCTGTTACCTCAGGGGAGCAGAAGCCTATTCCTGCTTTGCTTTC
ACTCACTGAAGAGTCTATGCCTTGGAAATCAAGCTTACCCCAAAAGATTAGCCTTGTACAAAGGGGGGAT
GACGCAGACCAAATCGAGCCGCCAAAAGTGTCATCACAAGAAAGGCCCCTTAAGGTTCCATCAGAACTTG
GTTTAGGAGAGGAATTCACCATTCAAGTAAAAAAGAAGCCAGTAAAAGATCCTGAGATGGATTGGTTTGC
TGATATGATCCCAGAAATTAAGCCTTCTGCTGCTTTTCTTATATTACCTGAACTGAGGACAGAAATGGTC
CCAAAAAAGGATGATGTCTCCCCAGTGATGCAGTTTTCCTCAAAATTTGCTGCAGCAGAAATTACTGAGG
GAGAGGCTGAAGGCTGGGAAGAAGAAGGGGAGCTGAACTGGGAAGATAATAACTGGTGA

Translation (742 aa):
MGSENSALKSYTLREPPFTLPSGLAVYPAVLQDGKFASVFVYKRENEDKVNKAAKHLKTLRHPCLLRFLS
CTVEADGIHLVTERVQPLEVALETLSSAEVCAGIYDILLALIFLHDRGHLTHNNVCLSSVFVSEDGHWKL
GGMETVCKVSQATPEFLRSIQSIRDPASIPPEEMSPEFTTLPECHGHARDAFSFGTLVESLLTILNEQVS
ADVLSSFQQTLHSTLLNPIPKCRPALCTLLSHDFFRNDFLEVVNFLKSLTLKSEEEKTEFFKFLLDRVSC
LSEELIASRLVPLLLNQLVFAEPVAVKSFLPYLLGPKKDHAQGETPCLLSPALFQSRVIPVLLQLFEVHE
EHVRMVLLSHIEAYVEHFTQEQLKKVILPQVLLGLRDTSDSIVAITLHSLAVLVSLLGPEVVVGGERTKI
FKRTAPSFTKNTDLSLEDSPMCVVCSHHSQISPILENPFSSIFPKCFFSGSTPINSKKHIQRDYYNTLLQ
TGDPFSQPIKFPINGLSDVKNTSEDSENFPSSSKKSEEWPDWSEPEEPENQTVNIQIWPREPCDDVKSQC
TTLDVEESSWDDCEPSSLDTKVNPGGGITATKPVTSGEQKPIPALLSLTEESMPWKSSLPQKISLVQRGD
DADQIEPPKVSSQERPLKVPSELGLGEEFTIQVKKKPVKDPEMDWFADMIPEIKPSAAFLILPELRTEMV
PKKDDVSPVMQFSSKFAAAEITEGEAEGWEEEGELNWEDNNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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