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Report for CCDS41452.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41452.2 Public Homo sapiens 1 DENND1B 24 110 108 CCDS HistoryNCBI Gene:163486Re-query CCDS DB by CCDS ID:41452.2Re-query CCDS DB by GeneID:163486See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41452.1
The coding region has been updated to represent an exon/intron structure that is more supported by the available transcript and protein data. The update is based on the human mRNA, BC063877.1, whose polyA site and signal confirm that it is complete at the 3' end. It is possible that there is a longer variant, as for mouse, but there is not enough transcript evidence to support it at this time.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41452.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367396.7 ENSP00000356366.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367396.7Link to Ensembl Protein Viewer:ENSP00000356366.3Re-query CCDS DB by Nucleotide ID:ENST00000367396Re-query CCDS DB by Protein ID:ENSP00000356366
Original member Current member NCBI NM_144977.5 NP_659414.2 Accepted alive Link to Nucleotide Sequence:NM_144977.5Link to Protein Sequence:NP_659414.2Re-query CCDS DB by Nucleotide ID:NM_144977Re-query CCDS DB by Protein ID:NP_659414Link to BLAST:NP_659414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659414.2 426 Q6P3S1-5 426 100% 0 0

Chromosomal Locations for CCDS 41452.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 197552981 197553112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197583152 197583253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197595208 197595333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197607073 197607174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197611931 197611976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197617659 197617759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197642711 197642821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197645690 197645743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197647055 197647114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197652235 197652315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197658300 197658369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197672037 197672156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197674120 197674169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197715031 197715074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197772868 197772932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 197775139 197775155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGACTGCAGGACCAAGGCAAATCCAGACAGAACCTTTGACTTGGTGTTGAAAGTGAAATGTCATGCCT
CTGAAAATGAAGATCCTGTGGTATTGTGGAAATTCCCAGAGGACTTTGGAGACCAGGAAATACTACAGAG
TGTGCCAAAGTTCTGTTTTCCCTTTGACGTTGAAAGGGTGTCTCAGAATCAAGTTGGACAGCACTTTACC
TTTGTACTGACAGACATTGAAAGTAAACAGAGATTTGGATTCTGCAGACTGACGTCAGGAGGCACAATTT
GTTTATGCATCCTTAGTTACCTTCCCTGGTTTGAAGTGTATTACAAGCTTCTAAATACTCTTGCAGATTA
CTTGGCTAAGGAACTGGAAAATGATTTGAATGAAACTCTCAGATCACTGTATAACCACCCAGTACCAAAG
GCAAATACTCCTGTAAATTTGAGTGTGAACCAAGAGATATTTATTGCCTGTGAGCAAGTTCTGAAAGATC
AGCCTGCTCTAGTACCGCATTCCTACTTCATTGCCCCTGATGTAACTGGACTCCCAACAATACCCGAGAG
TAGAAATCTTACAGAATATTTTGTTGCCGTGGATGTGAACAACATGCTGCAGCTGTATGCCAGTATGCTG
CATGAAAGGCGCATCGTGATTATCTCGAGCAAATTAAGCACTTTAACTGCCTGTATCCATGGATCAGCTG
CTCTTCTATACCCAATGTATTGGCAACACATATACATCCCAGTGCTTCCTCCACACCTGCTGGACTACTG
CTGTGCCCCAATGCCATACCTGATTGGAATACACTCCAGCCTCATAGAGAGAGTGAAAAACAAATCATTG
GAAGATGTTGTTATGTTAAATGTTGATACAAACACATTAGAATCACCATTTAGTGACTTGAACAACCTAC
CAAGTGATGTGGTCTCGGCCTTGAAAAATAAACTGAAGAAGCAGTCTACAGCTACGGGTGATGGAGTAGC
TAGGGCCTTTCTTAGAGCACAGGCTGCTTTGTTTGGATCCTACAGAGATGCACTGAGATACAAACCTGGT
GAGCCCATCACTTTCTGTGAGGAGAGTTTTGTAAAGCACCGCTCAAGCGTGATGAAACAGTTCCTGGAAA
CTGCCATTAACCTCCAGCTTTTTAAGCAGTTTATCGATGGTCGACTGGCAAAACTAAATGCAGGAAGGGG
TTTCTCTGATGTATTTGAAGAAGAGATCACTTCAGGTGGCTTTTGTGGAGGTAAAGACAAGTTACAATAT
GATTATCCATTTTCTCAATAA

Translation (426 aa):
MDCRTKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFT
FVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPK
ANTPVNLSVNQEIFIACEQVLKDQPALVPHSYFIAPDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASML
HERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSL
EDVVMLNVDTNTLESPFSDLNNLPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPG
EPITFCEESFVKHRSSVMKQFLETAINLQLFKQFIDGRLAKLNAGRGFSDVFEEEITSGGFCGGKDKLQY
DYPFSQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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