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Report for CCDS44291.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44291.2 Public Homo sapiens 1 PTPRC 24 110 108 CCDS HistoryNCBI Gene:5788Re-query CCDS DB by CCDS ID:44291.2Re-query CCDS DB by GeneID:5788See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 44291.1
The coding region has been updated to represent a better supported splicing pattern and to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44291.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413409.6 ENSP00000405494.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413409.6Link to Ensembl Protein Viewer:ENSP00000405494.3Re-query CCDS DB by Nucleotide ID:ENST00000413409Re-query CCDS DB by Protein ID:ENSP00000405494
Original member Current member NCBI NM_001267798.2 NP_001254727.1 Accepted alive Link to Nucleotide Sequence:NM_001267798.2Link to Protein Sequence:NP_001254727.1Re-query CCDS DB by Nucleotide ID:NM_001267798Re-query CCDS DB by Protein ID:NP_001254727Link to BLAST:NP_001254727.1

Chromosomal Locations for CCDS 44291.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 198639269 198639341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 198692347 198692373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 198694018 198694181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGACCATGTATTTGTGGCTTAAACTCTTGGCATTTGGCTTTGCCTTTCTGGACACAGAAGTATTTGTGA
CAGGGCAAAGCCCAACACCTTCCCCCACTGGCCATCTGCAAGCTGAGGAGCAAGGAAGCCAATCCAAGTC
ACCAAACCTCAAAAGTAGGGAAGCTGACAGTTCAGCCTTCAGTTGGTGGCCAAAGGCCCGAGAGCCCCTC
ACAAACCACTGGAGTAAGTCCAAGAGTCCAAAAGCTGAGGAACTTGGAGTCTGA

Translation (87 aa):
MTMYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGHLQAEEQGSQSKSPNLKSREADSSAFSWWPKAREPL
TNHWSKSKSPKAEELGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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