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Report for CCDS53581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53581.1 Public Homo sapiens 10 PLEKHS1 24 110 108 CCDS HistoryNCBI Gene:79949Re-query CCDS DB by CCDS ID:53581.1Re-query CCDS DB by GeneID:79949See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 53581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369312.9 ENSP00000358318.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369312.9Link to Ensembl Protein Viewer:ENSP00000358318.4Re-query CCDS DB by Nucleotide ID:ENST00000369312Re-query CCDS DB by Protein ID:ENSP00000358318
Original member Current member EBI ENST00000619563.5 ENSP00000483759.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619563.5Link to Ensembl Protein Viewer:ENSP00000483759.1Re-query CCDS DB by Nucleotide ID:ENST00000619563Re-query CCDS DB by Protein ID:ENSP00000483759
Original member Current member NCBI NM_001193434.2 NP_001180363.1 Accepted alive Link to Nucleotide Sequence:NM_001193434.2Link to Protein Sequence:NP_001180363.1Re-query CCDS DB by Nucleotide ID:NM_001193434Re-query CCDS DB by Protein ID:NP_001180363Link to BLAST:NP_001180363.1
Original member Current member NCBI NM_001193435.2 NP_001180364.1 Accepted alive Link to Nucleotide Sequence:NM_001193435.2Link to Protein Sequence:NP_001180364.1Re-query CCDS DB by Nucleotide ID:NM_001193435Re-query CCDS DB by Protein ID:NP_001180364Link to BLAST:NP_001180364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180363.1 366 Q5SXH7-3 366 99.7268% 0 1
NP_001180364.1 366 Q5SXH7-3 366 99.7268% 0 1

Chromosomal Locations for CCDS 53581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 113767385 113767479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113768815 113768890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113769784 113769900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113771970 113772089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113774227 113774333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113774826 113774993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113775765 113775866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113777124 113777259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 113780602 113780781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGCAATCTGTGCAGAAGATGTTTAAATGCCACCCTGATGAGGTCATGTCCATCAGAACCACTAACAGGG
AATACTTCCTCATTGGCCACGACAGGGAGAAGATTAAAGACTGGGTCTCCTTCATGTCATCATTTCGCCA
GGATATAAAAGCAACACAGCAGAACACAGAGGAGGAACTCTCATTGGGTAATAAAAGAACCCTCTTCTAC
TCCAGCCCTCTCCTTGGCCCTTCCAGCACATCAGAGGCTGTTGGCTCCAGCTCACCAAGAAATGGTCTCC
AAGACAAGCATTTAATGGAACAAAGTTCTCCAGGATTTAGGCAAACTCACCTACAAGATTTATCAGAAGC
CACTCAAGATGTGAAGGAAGAGAATCATTATCTTACTCCTCGAAGTGTTCTTTTAGAGTTGGATAATATC
ATTGCTTCCAGTGATTCTGGTGAATCCATTGAAACTGATGGTCCAGACCAGGTCTCTGGAAGAATTGAGT
GTCATTATGAGCCAATGGAATCCTATTTTTTCAAAGAGACATCCCATGAGTCTGTGGATAGCAGCAAAGA
GGAACCCCAGACCCTTCCAGAGACCCAGGATGGGGACCTCCACCTGCAAGAACAAGGCTCAGGAATTGAT
TGGTGTCTTTCCCCTGCCGATGTGGAAGCACAGACCACAAATGACCAAAAGGGTAATATCCCCGATGAAA
GCCAAGTGGAGAAACTGAACGTTTTCCTTTCTCCTCCTGATGTCATCAACTATCTTGCTCTCACAGAAGC
CACAGGACGGATATGTGTGTCTCAGTGGGAAGGCCCCCCACGTTTGGGATGCATATTTTGCCACGGAGAT
CATCTTCTGGCAGTGAATGACCTGAAACCCCAGAGCCTGGAGGAGGTCTCCCTGTTTCTTACCCGGTCCA
TCCAGAAGGAGAAATTAAAGCTTACCATCGGCAGGATCCCAAATTCAGAGACATTCCATGCTGCATCCTG
TATGTGTCCCTCAAAATGCCAAAGTGCTGCACCTTCTCAGCTGGATAAGCCTAGACTGAACAGAGCTCCC
AAGAGGAGTCCGGCCATTAAAAAGAGCCAGCAGAAAGGAGCCAGGGAGTAA

Translation (366 aa):
MQSVQKMFKCHPDEVMSIRTTNREYFLIGHDREKIKDWVSFMSSFRQDIKATQQNTEEELSLGNKRTLFY
SSPLLGPSSTSEAVGSSSPRNGLQDKHLMEQSSPGFRQTHLQDLSEATQDVKEENHYLTPRSVLLELDNI
IASSDSGESIETDGPDQVSGRIECHYEPMESYFFKETSHESVDSSKEEPQTLPETQDGDLHLQEQGSGID
WCLSPADVEAQTTNDQKGNIPDESQVEKLNVFLSPPDVINYLALTEATGRICVSQWEGPPRLGCIFCHGD
HLLAVNDLKPQSLEEVSLFLTRSIQKEKLKLTIGRIPNSETFHAASCMCPSKCQSAAPSQLDKPRLNRAP
KRSPAIKKSQQKGARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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