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Report for CCDS7819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7819.1 Public Homo sapiens 11 CALCA 24 110 108 CCDS HistoryNCBI Gene:796Re-query CCDS DB by CCDS ID:7819.1Re-query CCDS DB by GeneID:796See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7819.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331587.9 ENSP00000331746.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331587.9Link to Ensembl Protein Viewer:ENSP00000331746.4Re-query CCDS DB by Nucleotide ID:ENST00000331587Re-query CCDS DB by Protein ID:ENSP00000331746
Original member Current member EBI ENST00000396372.2 ENSP00000379657.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396372.2Link to Ensembl Protein Viewer:ENSP00000379657.2Re-query CCDS DB by Nucleotide ID:ENST00000396372Re-query CCDS DB by Protein ID:ENSP00000379657
Original member Current member NCBI NM_001033952.3 NP_001029124.1 Accepted alive Link to Nucleotide Sequence:NM_001033952.3Link to Protein Sequence:NP_001029124.1Re-query CCDS DB by Nucleotide ID:NM_001033952Re-query CCDS DB by Protein ID:NP_001029124Link to BLAST:NP_001029124.1
Original member Current member NCBI NM_001378949.1 NP_001365878.1 Accepted alive Link to Nucleotide Sequence:NM_001378949.1Link to Protein Sequence:NP_001365878.1Re-query CCDS DB by Nucleotide ID:NM_001378949Re-query CCDS DB by Protein ID:NP_001365878Link to BLAST:NP_001365878.1
Original member Current member NCBI NM_001741.3 NP_001732.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001741.3Link to Protein Sequence:NP_001732.1Re-query CCDS DB by Nucleotide ID:NM_001741Re-query CCDS DB by Protein ID:NP_001732Link to BLAST:NP_001732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029124.1 141 P01258-1 141 100% 0 0
NP_001365878.1 141 P01258-1 141 100% 0 0
NP_001732.1 141 P01258-1 141 100% 0 0

Chromosomal Locations for CCDS 7819.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 14968799 14968997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14969935 14970075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 14971107 14971192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGGCTTCCAAAAGTTCTCCCCCTTCCTGGCTCTCAGCATCTTGGTCCTGTTGCAGGCAGGCAGCCTCC
ATGCAGCACCATTCAGGTCTGCCCTGGAGAGCAGCCCAGCAGACCCGGCCACGCTCAGTGAGGACGAAGC
GCGCCTCCTGCTGGCTGCACTGGTGCAGGACTATGTGCAGATGAAGGCCAGTGAGCTGGAGCAGGAGCAA
GAGAGAGAGGGCTCCAGCCTGGACAGCCCCAGATCTAAGCGGTGCGGTAATCTGAGTACTTGCATGCTGG
GCACATACACGCAGGACTTCAACAAGTTTCACACGTTCCCCCAAACTGCAATTGGGGTTGGAGCACCTGG
AAAGAAAAGGGATATGTCCAGCGACTTGGAGAGAGACCATCGCCCTCATGTTAGCATGCCCCAGAATGCC
AACTAA

Translation (141 aa):
MGFQKFSPFLALSILVLLQAGSLHAAPFRSALESSPADPATLSEDEARLLLAALVQDYVQMKASELEQEQ
EREGSSLDSPRSKRCGNLSTCMLGTYTQDFNKFHTFPQTAIGVGAPGKKRDMSSDLERDHRPHVSMPQNA
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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