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Report for CCDS31712.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31712.2 Public Homo sapiens 11 OR8A1 24 110 108 CCDS HistoryNCBI Gene:390275Re-query CCDS DB by CCDS ID:31712.2Re-query CCDS DB by GeneID:390275See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 31712.1
The coding region has been updated to start at an downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31712.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284287.6 ENSP00000284287.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284287.6Link to Ensembl Protein Viewer:ENSP00000284287.4Re-query CCDS DB by Nucleotide ID:ENST00000284287Re-query CCDS DB by Protein ID:ENSP00000284287
Original member Current member EBI ENST00000641670.1 ENSP00000492950.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641670.1Link to Ensembl Protein Viewer:ENSP00000492950.1Re-query CCDS DB by Nucleotide ID:ENST00000641670Re-query CCDS DB by Protein ID:ENSP00000492950
Original member Current member NCBI NM_001005194.2 NP_001005194.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005194.2Link to Protein Sequence:NP_001005194.2Re-query CCDS DB by Nucleotide ID:NM_001005194Re-query CCDS DB by Protein ID:NP_001005194Link to BLAST:NP_001005194.2

Chromosomal Locations for CCDS 31712.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 124570120 124571049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCTGCAGGAAATCACTCTACAGTGACAGAGTTCATTCTCAAGGGTTTAACGAAGAGAGCAGACCTCC
AGCTCCCCCTCTTTCTCCTCTTCCTCGGGATCTACTTGGTCACCATCGTGGGGAACCTGGGCATGATCAC
TCTAATTTGTCTGAACTCTCAGCTGCACACCCCCATGTACTACTTTCTCAGCAATCTGTCACTCATGGAT
CTCTGCTACTCCTCCGTCATTACCCCTAAGATGCTGGTGAACTTTGTGTCAGAGAAAAACATCATCTCCT
ACGCAGGGTGCATGTCACAGCTCTACTTCTTCCTTGTTTTTGTCATTGCTGAGTGTTACATGCTGACAGT
GATGGCCTACGACCGCTATGTTGCCATCTGCCACCCTTTGCTTTACAACATCATTATGTCTCATCACACC
TGCCTGCTGCTGGTGGCTGTGGTCTACGCCATCGGACTCATTGGCTCCACAATAGAAACTGGCCTCATGT
TAAAACTGCCCTATTGTGAGCACCTCATCAGTCACTACTTCTGTGACATCCTCCCTCTCATGAAGCTGTC
CTGCTCTAGCACCTATGATGTTGAGATGACAGTCTTCTTTTCGGCTGGATTCAACATCATAGTCACGAGC
TTAACAGTTCTTGTTTCTTACACCTTCATTCTCTCCAGCATCCTCGGCATCAGCACCACAGAGGGGAGAT
CCAAAGCCTTCAGCACCTGCAGCTCCCACCTTGCAGCCGTGGGAATGTTCTATGGATCAACTGCATTCAT
GTACTTAAAACCCTCCACAATCAGTTCCTTGACCCAGGAGAATGTGGCCTCTGTGTTCTACACCACGGTA
ATCCCCATGTTGAATCCCCTAATCTACAGCCTGAGGAACAAGGAAGTAAAGGCTGCCGTGCAGAAAACGC
TGAGGGGTAAACTGTTTTGA

Translation (309 aa):
MAAGNHSTVTEFILKGLTKRADLQLPLFLLFLGIYLVTIVGNLGMITLICLNSQLHTPMYYFLSNLSLMD
LCYSSVITPKMLVNFVSEKNIISYAGCMSQLYFFLVFVIAECYMLTVMAYDRYVAICHPLLYNIIMSHHT
CLLLVAVVYAIGLIGSTIETGLMLKLPYCEHLISHYFCDILPLMKLSCSSTYDVEMTVFFSAGFNIIVTS
LTVLVSYTFILSSILGISTTEGRSKAFSTCSSHLAAVGMFYGSTAFMYLKPSTISSLTQENVASVFYTTV
IPMLNPLIYSLRNKEVKAAVQKTLRGKLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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