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Report for CCDS58199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58199.1 Public Homo sapiens 12 RHNO1 24 110 108 CCDS HistoryNCBI Gene:83695Re-query CCDS DB by CCDS ID:58199.1Re-query CCDS DB by GeneID:83695See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000461997.5 ENSP00000438828.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461997.5Link to Ensembl Protein Viewer:ENSP00000438828.1Re-query CCDS DB by Nucleotide ID:ENST00000461997Re-query CCDS DB by Protein ID:ENSP00000438828
Original member Current member NCBI NM_001252500.3 NP_001239429.1 Accepted alive Link to Nucleotide Sequence:NM_001252500.3Link to Protein Sequence:NP_001239429.1Re-query CCDS DB by Nucleotide ID:NM_001252500Re-query CCDS DB by Protein ID:NP_001239429Link to BLAST:NP_001239429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239429.1 224 Q9BSD3-2 224 100% 0 0

Chromosomal Locations for CCDS 58199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 2885367 2885492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2887911 2888459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCCTCCCAGAAAAAAACGCCGCCAGCCTTCCCAGAAAGCCCCGCTGCTGTTCCACCAACAACCACTGG
AGGGCCCCAAACACAGCTGTGCATCTACACAGCTTCCCATCACTCACACTCGACAGGTATCACCTGATTT
TGATACAGCAGCAGGAAGCTTGTTCCCAGCCTACCAGAAACACCAAAACCGGGCGAGACACTCAAGTCGA
AAACCTACCACCTCCAAGTTTCCACATCTAACTTTTGAGAGTCCGCAATCTTCCAGTTCAGAGACATTGG
GGATCCCCTTAATCCGAGAGTGCCCCAGTGAATCAGAAAAGGATGTTTCCAGAAGACCCTTAGTTCCAGT
GCTCAGTCCCCAAAGCTGTGGGAACATGTCAGTGCAGGCACTTCAGAGCTTACCTTATGTGTTCATTCCA
CCTGATATCCAGACCCCAGAGTCATCGTCTGTGAAGGAAGAACTCATTCCCCAAGATCAGAAGGAAAACA
GCCTTCTAAGCTGCACTCTTCACACTGGCACTCCTAATAGCCCAGAGCCTGGACCTGTTCTGGTTAAAGA
CACCCCCGAGGACAAGTATGGAATAAAGGTCACATGGAGGAGACGACAGCACCTGCTTGCTTACCTCAGG
GAGAGAGGGAAGCTGAGCAGAAGCCAATTCCTTGTGAAAAGCTGA

Translation (224 aa):
MPPRKKRRQPSQKAPLLFHQQPLEGPKHSCASTQLPITHTRQVSPDFDTAAGSLFPAYQKHQNRARHSSR
KPTTSKFPHLTFESPQSSSSETLGIPLIRECPSESEKDVSRRPLVPVLSPQSCGNMSVQALQSLPYVFIP
PDIQTPESSSVKEELIPQDQKENSLLSCTLHTGTPNSPEPGPVLVKDTPEDKYGIKVTWRRRQHLLAYLR
ERGKLSRSQFLVKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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