NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53788.1 Public Homo sapiens 12 ZNF641 24 110 108 CCDS HistoryNCBI Gene:121274Re-query CCDS DB by CCDS ID:53788.1Re-query CCDS DB by GeneID:121274See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547026.6 ENSP00000449974.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000547026.6Link to Ensembl Protein Viewer:ENSP00000449974.1Re-query CCDS DB by Nucleotide ID:ENST00000547026Re-query CCDS DB by Protein ID:ENSP00000449974
Original member Current member NCBI NM_001172681.2 NP_001166152.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172681.2Link to Protein Sequence:NP_001166152.1Re-query CCDS DB by Nucleotide ID:NM_001172681Re-query CCDS DB by Protein ID:NP_001166152Link to BLAST:NP_001166152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166152.1 424 Q96N77-4 424 100% 0 0

Chromosomal Locations for CCDS 53788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48342973 48343727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48344599 48344712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48345345 48345474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347252 48347343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347907 48348090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAG
AGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCT
GTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGGCTCAGTCTGCTCCCTGGGTTCCTGCA
ATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAGGGCC
TGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGAC
AGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGAGATTTCCAATTCCC
AAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGG
AGAGGGACATTCTGAGGGTCACATATACAGGAGATGGAAGTGAACATGAGGGGGATACCCCTGAACTAGA
AGCAGAACCTCCCAGAATGTTATCCAGCGTGTCTGAAGATACTGTTCTCTGGAACCCGGAGCATGATGAG
AGCTGGGATTCCATGCCCAGCAGCTCCAGAGGAATGCTCCTGGGGCCCCCTTTTCTTCAGGAAGATAGTT
TCTCAAACCTGCTGTGTAGCACAGAGATGGATTCCCTGTTAAGACCCCACACATGCCCCCAGTGTGGGAA
ACAGTTTGTATGGGGTTCCCACCTTGCCAGGCATCAACAAACACACACTGGGGAGAGACCCTACAGCTGC
CTCAAGTGTGAGAAGACCTTTGGGCGAAGACATCACCTCATCAGGCACCAGAAAACCCACCTACATGACA
AGACCAGCAGGTGCTCTGAGTGTGGTAAGAATTTCCGATGCAACTCCCATCTGGCCAGCCACCAGAGAGT
GCATGCAGAAGGCAAATCCTGCAAAGGCCAAGAGGTTGGAGAGAGCCCTGGCACAAGGAAACGGCAGCGT
GCCCCACCAGTGCCAAAGTGTCACGTGTGCACTGAATGTGGGAAGAGCTTTGGCCGAAGGCACCACCTTG
TGAGACACTGGCTGACCCACACTGGGGAGAAGCCCTTCCAGTGCCCTCGCTGTGAGAAGAGCTTTGGCCG
AAAACATCACCTGGACAGGCACCTGCTCACCCACCAGGGACAAAGTCCCCGGAACAGCTGGGACAGAGGA
ACATCTGTCTTTTGA

Translation (424 aa):
MLSEQTAALGTGWESMNVQLDGAEPQVERGSQEERPWRTVPGPLEHLCCDLEEEPQSLQEKAQSAPWVPA
IPQEGNTGDWEMAAALLAAGSQGLVTIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSLRFPIP
KLDMLSQLEGGEEQWVPDPQDLEERDILRVTYTGDGSEHEGDTPELEAEPPRMLSSVSEDTVLWNPEHDE
SWDSMPSSSRGMLLGPPFLQEDSFSNLLCSTEMDSLLRPHTCPQCGKQFVWGSHLARHQQTHTGERPYSC
LKCEKTFGRRHHLIRHQKTHLHDKTSRCSECGKNFRCNSHLASHQRVHAEGKSCKGQEVGESPGTRKRQR
APPVPKCHVCTECGKSFGRRHHLVRHWLTHTGEKPFQCPRCEKSFGRKHHLDRHLLTHQGQSPRNSWDRG
TSVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH