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Report for CCDS41781.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41781.2 Public Homo sapiens 12 NCKAP5L 24 110 108 CCDS HistoryNCBI Gene:57701Re-query CCDS DB by CCDS ID:41781.2Re-query CCDS DB by GeneID:57701See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 41781.1
The coding region has been updated to represent an alternative splice pattern, and to extend the N- and C-termini based on available transcript and homologous protein data. There are no full-length mRNAs representing the update in human, but this can be constructed from tiled transcripts, including CN359946.1, CN359941.1 and BC033253.1, with support from the full-length mouse mRNA, BC110599.2.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41781.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335999.7 ENSP00000337998.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335999.7Link to Ensembl Protein Viewer:ENSP00000337998.6Re-query CCDS DB by Nucleotide ID:ENST00000335999Re-query CCDS DB by Protein ID:ENSP00000337998
Original member Current member NCBI NM_001037806.4 NP_001032895.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037806.4Link to Protein Sequence:NP_001032895.2Re-query CCDS DB by Nucleotide ID:NM_001037806Re-query CCDS DB by Protein ID:NP_001032895Link to BLAST:NP_001032895.2
Original member Current member NCBI NM_001368048.1 NP_001354977.1 Accepted alive Link to Nucleotide Sequence:NM_001368048.1Link to Protein Sequence:NP_001354977.1Re-query CCDS DB by Nucleotide ID:NM_001368048Re-query CCDS DB by Protein ID:NP_001354977Link to BLAST:NP_001354977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032895.2 1334 Q9HCH0-1 1334 100% 0 0
NP_001354977.1 1334 Q9HCH0-1 1334 100% 0 0

Chromosomal Locations for CCDS 41781.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49791839 49792051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49792446 49792588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49792678 49792986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49793352 49793433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49793734 49793896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49794765 49797394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49798350 49798463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49801848 49801967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49802958 49802996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49803097 49803165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49803922 49804044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4005 nt):
ATGTCAGAGGCCATGGACCAGCCAGCTGGGGGTCCTGGAAACCCAAGGCCAGGAGAGGGTGATGATGGCA
GCATGGAGCCAGGCACCTGCCAGGAGCTTCTGCACCGACTGCGGGAGCTGGAGGCAGAGAACTCGGCACT
TGCCCAGGCCAACGAAAACCAGCGGGAGACTTATGAGCGCTGTCTGGACGAGGTTGCCAACCATGTGGTA
CAGGCGTTGCTGAACCAGAAGGACCTGCGAGAGGAGTGCATCAAGCTGAAGAAGAGAGTGTTTGACCTGG
AACGGCAGAACCAGATGCTGAGTGCCCTGTTTCAGCAGAAACTCCAGCTCACGACAGGCTCGCTCCCTCA
GATCCCACTCACTCCACTCCAGCCACCATCAGAGCCACCAGCCTCCCCCTCCCTGAGCTCCACTGAGGGA
CCGGCTGCCCCGCTGCCTCTGGGGCACTGTGCTGGGCAGAGAGAGGTATGTTGGGAGCAGCAGCTGAGGC
CAGGAGGCCCAGGCCCCCCAGCCGCCCCACCCCCAGCGCTGGATGCCCTATCCCCGTTCCTTCGGAAGAA
GGCCCAGATTCTGGAGGTGCTGAGAGCCCTGGAAGAGACTGACCCCTTGCTTCTCTGCTCACCTGCCACC
CCCTGGCGGCCTCCAGGCCAGGGGCCTGGCTCCCCAGAGCCCATCAACGGCGAGCTGTGTGGCCCGCCTC
AGCCTGAACCCTCACCCTGGGCGCCCTGCCTGCTGCTAGGCCCTGGCAACCTGGGAGGCCTGCTGCACTG
GGAGCGCCTCTTGGGGGGTCTGGGAGGGGAAGAGGACACTGGGCGGCCCTGGGGTCCTAGCAGGGGACCT
CCTCAGGCCCAGGGCACCAGCTCTGGCCCAAACTGTGCCCCAGGCAGCAGCTCCTCCTCCTCTTCTGATG
AGGCAGGTGACCCCAATGAGGCACCCAGCCCCGACACCCTGCTCGGTGCCCTGGCCCGCAGACAGTTGAA
CCTGGGCCAGCTCCTTGAGGACACAGAGTCTTACCTACAGGCCTTCCTGGCCGGGGCTGCAGGCCCACTC
AATGGGGACCACCCAGGTCCTGGGCAGTCATCCTCCCCAGACCAGGCGCCCCCACAGCTGTCTAAGTCCA
AAGGCCTCCCCAAGTCAGCTTGGGGTGGGGGTACCCCAGAGGCCCACAGGCCAGGCTTCGGTGCTACCTC
AGAGGGCCAGGGGCCCCTCCCCTTCCTTAGCATGTTCATGGGTGCTGGGGATGCCCCACTGGGCTCTCGG
CCTGGCCACCCCCATTCCTCATCTCAGGTGAAAAGCAAGCTCCAAATTGGCCCCCCTTCTCCTGGGGAAG
CTCAGGGACCCCTTCTGCCCTCTCCAGCTAGGGGTCTCAAGTTTCTAAAGCTGCCTCCAACCTCGGAGAA
GAGCCCCAGCCCAGGAGGCCCGCAGCTCAGTCCCCAGCTCCCCCGGAACTCGCGAATCCCCTGTCGGAAC
AGTGGCTCAGACGGCAGCCCCTCCCCACTGTTGGCCCGAAGGGGTCTGGGTGGAGGAGAGCTGTCCCCAG
AGGGGGCGCAAGGCCTGCCCACCAGCCCTTCACCCTGCTACACAACCCCAGACTCCACACAGCTCAGACC
CCCGCAGTCAGCCTTGTCCACCACGCTGTCCCCAGGCCCAGTGGTGTCTCCCTGCTATGAGAACATTCTG
GACCTTTCTCGGAGCACCTTTAGGGGGCCTTCCCCAGAGCCACCTCCATCCCCACTGCAGGTGCCCACCT
ACCCACAGCTAACTCTGGAGGTACCACAGGCCCCTGAGGTCCTCAGAAGCCCTGGAGTACCCCCCAGTCC
TTGCCTCCCAGAATCGTACCCCTATGGGAGCCCCCAAGAGAAGAGTTTGGACAAGGCAGGCTCGGAGTCT
CCCCATCCCGGCCGCAGGACCCCAGGCAACTCATCCAAGAAGCCCAGCCAGGGGTCAGGACGGCGACCTG
GGGATCCTGGCAGCACACCTCTGCGGGACAGACTGGCGGCCCTGGGGAAGCTGAAGACAGGCCCCGAGGG
GGCCCTGGGCTCAGAGAAGAATGGGGTGCCAGCCAGGCCTGGCACCGAAAAGACCCGGGGACCTGGGAAG
TCAGGGGAGAGTGCTGGAGACATGGTGCCCTCCATCCACAGGCCACTGGAGCAGCTAGAAGCCAAGGGGG
GGATACGGGGGGCAGTGGCCTTGGGCACAAACAGCCTGAAGCAGCAGGAACCTGGACTTATGGGGGATCC
CGGGGCCCGAGTCTACTCCTCTCACTCCATGGGGGCCCGGGTGGACCTGGAGCCTGTCTCACCAAGGAGC
TGCCTCACCAAAGTGGAGCTGGCCAAGAGCCGGCTGGCAGGGGCCCTGTGCCCCCAGGTACCCCGTACCC
CTGCCAAAGTGCCAACCTCAGCCCCAAGCCTGGGCAAGCCCAATAAGAGCCCTCACAGCAGCCCCACCAA
GCTCCCTTCCAAGTCACCAACCAAGGTGGTGCCTCGACCTGGGGCTCCGCTAGTCACCAAGGAGTCCCCC
AAGCCTGACAAAGGGAAGGGCCCTCCCTGGGCAGACTGTGGTAGTACCACGGCCCAGTCCACACCCCTAG
TACCTGGCCCCACTGACCCAAGTCAGGGCCCTGAGGGGCTGGCCCCACACTCAGCCATCGAGGAGAAGGT
GATGAAGGGCATTGAGGAGAACGTGCTGCGGCTCCAGGGCCAGGAGCGAGCCCCTGGCGCCGAGGTCAAG
CACCGCAACACCAGCAGCATCGCCAGCTGGTTCGGCCTTAAGAAGAGCAAGCTGCCAGCGCTGAACCGCC
GCACAGAGGCCACCAAGAACAAGGAGGGGGCTGGCGGGGGCTCCCCGCTCCGGAGGGAAGTCAAGATGGA
AGCCCGGAAGCTGGAGGCCGAGAGCCTCAACATCTCCAAGCTGATGGCCAAGGCGGAAGACCTGCGTCGG
GCACTGGAAGAGGAGAAGGCCTACCTAAGCAGCCGGGCCCGGCCACGGCCTGGTGGCCCAGCCCCAGGGC
CCAACACGGGGCTGGGGCAGGTGCAGGGCCAGCTGGCTGGCATGTACCAAGGTGCAGACACCTTCATGCA
GCAGCTGCTAAACAGGGTGGATGGCAAGGAGCTGCCATCCAAGAGCTGGCGGGAGCCCAAGCCTGAGTAC
GGGGATTTCCAGCCGGTGTCTTCTGACCCCAAGAGCCCCTGGCCAGCCTGTGGGCCCCGGAATGGCCTGG
TGGGCCCTCTTCAGGGCTGCGGAAAACCTCCTGGAAAGCCGAGCAGCGAGCCAGGGAGGCGGGAAGAGAT
GCCCTCGGAGGACAGCCTGGCCGAGCCAGTGCCCACCTCACACTTCACAGCCTGTGGCTCCTTGACTCGA
ACCTTGGACAGTGGCATTGGGACCTTCCCACCCCCAGACCATGGTAGCAGTGGGACCCCCAGCAAGAATC
TTCCTAAGACCAAGCCACCGCGGCTGGATCCCCCACCTGGGGTACCCCCAGCTCGGCCCCCACCCCTTAC
CAAAGTCCCCCGCCGCGCCCACACACTGGAGCGGGAGGTGCCAGGCATAGAGGAGCTGCTGGTGAGTGGG
CGGCACCCCAGCATGCCAGCCTTCCCTGCACTGCTACCCGCTGCTCCGGGCCACCGGGGCCATGAGACCT
GTCCTGATGATCCCTGTGAAGACCCAGGCCCCACCCCTCCTGTCCAGCTGGCCAAGAACTGGACCTTCCC
CAATACTAGGGCAGCCGGCAGCTCCTCGGACCCTCTCATGTGCCCACCCCGACAACTGGAGGGGCTGCCC
AGGACCCCCATGGCCCTGCCCGTGGACCGGAAGCGAAGCCAGGAGCCCAGCCGCCCGTCCCCTACGCCCC
AGGGCCCACCTTTCGGGGGTAGCCGCACCCCCAGCACTTCGGACATGGCCGAGGAAGGCAGAGTGGCCAG
CGGGGGCCCCCCAGGGCTGGAGACCTCGGAGTCTCTCAGTGACTCACTCTACGACTCGCTGTCCTCTTGT
GGGAGTCAGGGCTGA

Translation (1334 aa):
MSEAMDQPAGGPGNPRPGEGDDGSMEPGTCQELLHRLRELEAENSALAQANENQRETYERCLDEVANHVV
QALLNQKDLREECIKLKKRVFDLERQNQMLSALFQQKLQLTTGSLPQIPLTPLQPPSEPPASPSLSSTEG
PAAPLPLGHCAGQREVCWEQQLRPGGPGPPAAPPPALDALSPFLRKKAQILEVLRALEETDPLLLCSPAT
PWRPPGQGPGSPEPINGELCGPPQPEPSPWAPCLLLGPGNLGGLLHWERLLGGLGGEEDTGRPWGPSRGP
PQAQGTSSGPNCAPGSSSSSSSDEAGDPNEAPSPDTLLGALARRQLNLGQLLEDTESYLQAFLAGAAGPL
NGDHPGPGQSSSPDQAPPQLSKSKGLPKSAWGGGTPEAHRPGFGATSEGQGPLPFLSMFMGAGDAPLGSR
PGHPHSSSQVKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPTSEKSPSPGGPQLSPQLPRNSRIPCRN
SGSDGSPSPLLARRGLGGGELSPEGAQGLPTSPSPCYTTPDSTQLRPPQSALSTTLSPGPVVSPCYENIL
DLSRSTFRGPSPEPPPSPLQVPTYPQLTLEVPQAPEVLRSPGVPPSPCLPESYPYGSPQEKSLDKAGSES
PHPGRRTPGNSSKKPSQGSGRRPGDPGSTPLRDRLAALGKLKTGPEGALGSEKNGVPARPGTEKTRGPGK
SGESAGDMVPSIHRPLEQLEAKGGIRGAVALGTNSLKQQEPGLMGDPGARVYSSHSMGARVDLEPVSPRS
CLTKVELAKSRLAGALCPQVPRTPAKVPTSAPSLGKPNKSPHSSPTKLPSKSPTKVVPRPGAPLVTKESP
KPDKGKGPPWADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIEEKVMKGIEENVLRLQGQERAPGAEVK
HRNTSSIASWFGLKKSKLPALNRRTEATKNKEGAGGGSPLRREVKMEARKLEAESLNISKLMAKAEDLRR
ALEEEKAYLSSRARPRPGGPAPGPNTGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPSKSWREPKPEY
GDFQPVSSDPKSPWPACGPRNGLVGPLQGCGKPPGKPSSEPGRREEMPSEDSLAEPVPTSHFTACGSLTR
TLDSGIGTFPPPDHGSSGTPSKNLPKTKPPRLDPPPGVPPARPPPLTKVPRRAHTLEREVPGIEELLVSG
RHPSMPAFPALLPAAPGHRGHETCPDDPCEDPGPTPPVQLAKNWTFPNTRAAGSSSDPLMCPPRQLEGLP
RTPMALPVDRKRSQEPSRPSPTPQGPPFGGSRTPSTSDMAEEGRVASGGPPGLETSESLSDSLYDSLSSC
GSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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