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Report for CCDS61273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61273.1 Public Homo sapiens 12 ARL6IP4 24 110 108 CCDS HistoryNCBI Gene:51329Re-query CCDS DB by CCDS ID:61273.1Re-query CCDS DB by GeneID:51329See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454885.6 ENSP00000396723.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454885.6Link to Ensembl Protein Viewer:ENSP00000396723.2Re-query CCDS DB by Nucleotide ID:ENST00000454885Re-query CCDS DB by Protein ID:ENSP00000396723
Original member Current member NCBI NM_001278380.2 NP_001265309.1 Accepted alive Link to Nucleotide Sequence:NM_001278380.2Link to Protein Sequence:NP_001265309.1Re-query CCDS DB by Nucleotide ID:NM_001278380Re-query CCDS DB by Protein ID:NP_001265309Link to BLAST:NP_001265309.1
Original member Current member NCBI NM_001400283.1 NP_001387212.1 Accepted alive Link to Nucleotide Sequence:NM_001400283.1Link to Protein Sequence:NP_001387212.1Re-query CCDS DB by Nucleotide ID:NM_001400283Re-query CCDS DB by Protein ID:NP_001387212Link to BLAST:NP_001387212.1
Original member Current member NCBI NM_001400302.1 NP_001387231.1 Accepted alive Link to Nucleotide Sequence:NM_001400302.1Link to Protein Sequence:NP_001387231.1Re-query CCDS DB by Nucleotide ID:NM_001400302Re-query CCDS DB by Protein ID:NP_001387231Link to BLAST:NP_001387231.1
Original member Current member NCBI NM_001400309.1 NP_001387238.1 Accepted alive Link to Nucleotide Sequence:NM_001400309.1Link to Protein Sequence:NP_001387238.1Re-query CCDS DB by Nucleotide ID:NM_001400309Re-query CCDS DB by Protein ID:NP_001387238Link to BLAST:NP_001387238.1
Original member Current member NCBI NM_001400319.1 NP_001387248.1 Accepted alive Link to Nucleotide Sequence:NM_001400319.1Link to Protein Sequence:NP_001387248.1Re-query CCDS DB by Nucleotide ID:NM_001400319Re-query CCDS DB by Protein ID:NP_001387248Link to BLAST:NP_001387248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265309.1 226 Q66PJ3-7 226 100% 0 0
NP_001387212.1 226 Q66PJ3-7 226 100% 0 0
NP_001387231.1 226 Q66PJ3-7 226 100% 0 0
NP_001387238.1 226 Q66PJ3-7 226 100% 0 0
NP_001387248.1 226 Q66PJ3-7 226 100% 0 0

Chromosomal Locations for CCDS 61273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122981140 122981266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981571 122981879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122981957 122982074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982469 122982538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122982620 122982676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGCTCACGTCGGCTCCCGCAAGCGCTCGAGGAGTCGCAGCCGGTCCCGGGGACGGGGGTCGGAAAAGA
GAAAGAAGAAGAGCAGGAAAGACACCTCGAGGAACTGCTCGGCCTCCACATCCCAAGCCTCACCTTCTCC
CTGCATCACAGAGAGAAGCAAGCAGAAGGCCCGGAGGAGAACAAGATCCAGCTCCTCCTCCTCTTCTTCC
AGTTCTTCTAGCTCCTCTTCTTCCTCCTCGTCCTCCTCCTCTTCCTCCAGTGATGGCCGGAAGAAGCGGG
GGAAGTACAAGGACAAGAGGAGGAAGAAGAAGAAGAAGAGGAAGAAGCTGAAGAAGAAGGGCAAGGAGAA
GGCGGAAGCACAGCAGGTGGAGGCTCTGCCGGGCCCCTCGCTGGACCAGTGGCACCGATCAGCTGGGGAG
GAAGAGGATGGCCCAGTCCTGACGGATGAGCAGAAGTCCCGAATCCAGGCCATGAAGCCCATGACCAAGG
AGGAGTGGGATGCCCGGCAGAGCATCATCCGCAAGGTGGTGGACCCTGAGACGGGGCGCACCAGGCTTAT
TAAGGGAGATGGCGAGGTCCTAGAGGAAATCGTAACCAAAGAACGACACAGAGAGATCAACAAGCAAGCC
ACCCGAGGGGACTGCCTGGCCTTCCAGATGCGAGCTGGGTTGCTTCCCTGA

Translation (226 aa):
MAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQASPSPCITERSKQKARRRTRSSSSSSSS
SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGE
EEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKQA
TRGDCLAFQMRAGLLP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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