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Report for CCDS58291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58291.1 Public Homo sapiens 13 TSC22D1 24 110 108 CCDS HistoryNCBI Gene:8848Re-query CCDS DB by CCDS ID:58291.1Re-query CCDS DB by GeneID:8848See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 58291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000501704.3 ENSP00000437414.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000501704.3Link to Ensembl Protein Viewer:ENSP00000437414.1Re-query CCDS DB by Nucleotide ID:ENST00000501704Re-query CCDS DB by Protein ID:ENSP00000437414
Original member Current member NCBI NM_001243799.1 NP_001230728.1 Accepted alive Link to Nucleotide Sequence:NM_001243799.1Link to Protein Sequence:NP_001230728.1Re-query CCDS DB by Nucleotide ID:NM_001243799Re-query CCDS DB by Protein ID:NP_001230728Link to BLAST:NP_001230728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230728.1 570 Q15714-4 570 100% 0 0

Chromosomal Locations for CCDS 58291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 44433965 44434014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 44574412 44576074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGCACCAGCCGCCTGAGTCCACCGCCGCGGCCGCCGCCGCTGCAGACATTAGCGCTAGGAAGATGGCGC
ACCCGGCAATGTTCCCTCGAAGGGGCAGCGGTAGTGGCAGCGCCTCTGCTCTCAATGCAGCAGGTACCGG
CGTCGGTAGTAATGCCACATCTTCCGAGGATTTTCCGCCTCCGTCGCTGCTTCAGCCGCCGCCCCCTGCA
GCATCTTCTACGTCGGGACCACAGCCTCCGCCTCCACAAAGCCTGAACCTCCTTTCGCAGGCTCAGCTGC
AGGCACAGCCTCTTGCGCCAGGCGGAACTCAAATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTAC
TCCTGCTCAGATCTCCGCTAGTATCAGCTCTAACAACAGTATAGCAGAGGACACTGAGAGCTATGATGAT
CTGGATGAATCTCACACGGAAGATCTCTCTTCTTCGGAGATCCTTGATGTGTCACTTTCCAGGGCTACTG
ACTTAGGGGAGCCCGAACGCAGCTCCTCAGAAGAGACCCTAAATAACTTCCAGGAAGCCGAGACACCTGG
GGCAGTCTCTCCCAACCAGCCCCACCTTCCTCAGCCTCATTTGCCTCACCTTCCACAACAGAATGTTGTG
ATCAATGGGAATGCTCATCCACACCACCTCCATCACCACCATCAGATTCATCATGGGCACCACCTCCAAC
ATGGTCACCACCATCCATCTCATGTTGCTGTGGCCAGTGCATCCATTACTGGTGGGCCACCCTCAAGCCC
AGTATCTAGAAAACTCTCTACAACTGGAAGCTCTGACAGTATCACACCAGTTGCACCAACTTCTGCTGTA
TCATCCAGTGGTTCACCTGCATCTGTAATGACTAATATGCGTGCTCCAAGTACTACAGGTGGAATAGGTA
TAAATTCTGTTACTGGCACTAGTACAGTAAATAATGTTAACATTACTGCTGTGGGTAGTTTTAATCCTAA
TGTGACAAGCAGCATGCTTGGTAATGTTAATATAAGTACAAGCAATATTCCTAGTGCTGCTGGTGTGAGT
GTTGGGCCTGGAGTTACCAGTGGTGTTAATGTGAATATCTTGAGTGGCATGGGCAATGGTACTATTTCTT
CCTCTGCTGCTGTTAGCAGTGTTCCTAATGCAGCTGCAGGGATGACTGGGGGATCGGTTTCAAGTCAGCA
GCAACAACCAACAGTTAACACTTCGAGGTTCAGAGTTGTGAAGTTAGATTCTAGTTCTGAGCCCTTTAAA
AAAGGTAGATGGACTTGCACTGAGTTCTATGAAAAAGAAAATGCTGTACCTGCTACAGAAGGTGTGCTGA
TAAATAAAGTGGTGGAGACTGTAAAGCAAAATCCGATAGAAGTGACTTCTGAAAGGGAGAGCACTAGTGG
GAGTTCAGTGAGCAGTAGTGTCAGCACACTGAGTCACTATACAGAGAGTGTGGGAAGTGGAGAGATGGGA
GCCCCTACTGTGGTGGTGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACCAGCTCTCCAAG
GTGTGACCCTCCAACAGATGGATTTTGGTAGCACTGGTCCACAGAGTATTCCAGCAGTTAGTATACCACA
GAGTATTTCTCAGTCACAGATCTCACAAGTACAATTACAGTCTCAAGAACTGAGCTATCTTACCATGAAG
GTTGTTTTGCTTATTGTATATTTGTGTATGTAG

Translation (570 aa):
MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGSGSASALNAAGTGVGSNATSSEDFPPPSLLQPPPPA
ASSTSGPQPPPPQSLNLLSQAQLQAQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDTESYDD
LDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVV
INGNAHPHHLHHHHQIHHGHHLQHGHHHPSHVAVASASITGGPPSSPVSRKLSTTGSSDSITPVAPTSAV
SSSGSPASVMTNMRAPSTTGGIGINSVTGTSTVNNVNITAVGSFNPNVTSSMLGNVNISTSNIPSAAGVS
VGPGVTSGVNVNILSGMGNGTISSSAAVSSVPNAAAGMTGGSVSSQQQQPTVNTSRFRVVKLDSSSEPFK
KGRWTCTEFYEKENAVPATEGVLINKVVETVKQNPIEVTSERESTSGSSVSSSVSTLSHYTESVGSGEMG
APTVVVQQQQQQQQQQQQQPALQGVTLQQMDFGSTGPQSIPAVSIPQSISQSQISQVQLQSQELSYLTMK
VVLLIVYLCM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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