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Report for CCDS66578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66578.1 Public Homo sapiens 13 TEX30 24 110 108 CCDS HistoryNCBI Gene:93081Re-query CCDS DB by CCDS ID:66578.1Re-query CCDS DB by GeneID:93081See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376027.5 ENSP00000365195.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376027.5Link to Ensembl Protein Viewer:ENSP00000365195.1Re-query CCDS DB by Nucleotide ID:ENST00000376027Re-query CCDS DB by Protein ID:ENSP00000365195
Original member Current member EBI ENST00000376029.3 ENSP00000365197.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376029.3Link to Ensembl Protein Viewer:ENSP00000365197.3Re-query CCDS DB by Nucleotide ID:ENST00000376029Re-query CCDS DB by Protein ID:ENSP00000365197
Original member Current member NCBI NM_001286775.2 NP_001273704.1 Accepted alive Link to Nucleotide Sequence:NM_001286775.2Link to Protein Sequence:NP_001273704.1Re-query CCDS DB by Nucleotide ID:NM_001286775Re-query CCDS DB by Protein ID:NP_001273704Link to BLAST:NP_001273704.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273704.1 113 Q5JUR7-2 113 100% 0 0

Chromosomal Locations for CCDS 66578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 102766537 102766580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102768260 102768311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102769311 102769541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102770012 102770026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAGTCATACAGAGGTTAAATTAAAAATACCTTTTGGAAATAAATTACTAGATGCTGTTTGTTTGGTAC
CTAACAAGAGCTTAACATATGGAATAATTCTTACACATGGAGCATCAGGAGATATGAATCTTCCTCATTT
GATGTCACTGGCATCCCATCTTGCATCTCATGGGTTTTTCTGCCTGAGATTTACCTGTAAAGGCCTTAAT
ATTGTACATAGAATTAAGGCGTATAAATCAGTTTTGAATTACCTGAAGACATCAGGAGAATACAAACTTG
CAGGTGTTTTTCTTGGAGAACTTGTTGGAGAAAGTGGCACAGAAAATGCAAGCTCCCCATAA

Translation (113 aa):
MSHTEVKLKIPFGNKLLDAVCLVPNKSLTYGIILTHGASGDMNLPHLMSLASHLASHGFFCLRFTCKGLN
IVHRIKAYKSVLNYLKTSGEYKLAGVFLGELVGESGTENASSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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